Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02491 ATGGGTAACGCCCATGGACACCGCCATCGCAAACACCCTAACTCCGTTCCTCCGCCCCATAAATACGATCATCCTCCACCATTCCCAACCCCACCACCACCCATAGCCAATTCCAGCATGCTCTCTCTCCCTTACACCCACGTCGACACAACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGCTTCGCCGTCGGCGGCTTCCACGGTCCCCTTCACCGCGTCACATCTCTCGCAGATGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGGAAAAGAACCGTTGTGGATTGTGTTTGAGGTGTCCGGCACCATTCATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTCACCGGAAAAGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAACACATATGGATTGATCGTTGCACGCTCGCTGATTATGATGACGGGCTTATAGACATCACACGAGAAAGCACAGACATTACTATCTCGAGGTGTCACTTCCTTCAGCATGATAAAACCATACTTATTGGGGCTGATCCATCGCATATTGACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTACAATAATTATATCAGAAACTGGGGCATATATGCTGTGTGCGCTGGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCGGGACAGAAGAAGGTGGCGTTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAACAAGCGGCAACATTAGGTCTGAGGGAGACTTGTTCTTAAATGGTGCTGAACCAGGGTTAATGGCTGAGAACGGAGGCTGCAACATGTTTCACCCCAGTGAACACTATCCCTCATGGACAGTGGAAGCCCCTACAGACGATCTAAAACATATTCTTCATCACTGCACTGGTTGGCAATCTGTTGCTAGGCCAACAGATCAAGCACTATGA 1107 0.5131 MGNAHGHRHRKHPNSVPPPHKYDHPPPFPTPPPPIANSSMLSLPYTHVDTTLRALAAQAEGFGRFAVGGFHGPLHRVTSLADDGPGSLREACRGKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLADYDDGLIDITRESTDITISRCHFLQHDKTILIGADPSHIDDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCAGVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGTSGNIRSEGDLFLNGAEPGLMAENGGCNMFHPSEHYPSWTVEAPTDDLKHILHHCTGWQSVARPTDQAL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02491 368 SMART amb_all 70 283 IPR002022 -
Phac7g02491 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Phac7g02491 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Phac7g02491 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Phac7g02491 368 MobiDBLite consensus disorder prediction 1 15 - -
Phac7g02491 368 MobiDBLite consensus disorder prediction 19 35 - -
Phac7g02491 368 Pfam Pectate lyase 113 277 IPR002022 -
Phac7g02491 368 Gene3D - 44 350 IPR012334 -
Phac7g02491 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Phac7g02491 368 MobiDBLite consensus disorder prediction 1 35 - -
Phac7g02491 368 PANTHER PECTATE LYASE 18-RELATED 49 316 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02491 Phac-Chr7 29056007 29060066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02491 80 368 Polysaccharide Lyase AT3G55140 75.087 2.33e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02491 K01728 - gmx:100814368 662.529