Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02428 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGAGGACGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCCATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGTCAGGTTGTGATGCACAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGCCTTCCGGCGGAGGCGACGGCGTCATTCCGGCCAGGGAGATTCGATCTTCTGAACACGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCACCCTTCGATCATCACGATTTCTGCGCCGACATGCTCAATCCGCCGACAAACGCAATAGCGAGCCAGAGTCACAGCAGCGCCGCCATACAATCCTCCATTCGCACGACGGAGCTTCGGCATCCGGCTCCTCGGCCGCCGATTCCTCCGTCTCGGCTGCCGGTGCCTGCGGCAAAAAGGATGCAGAATTTCGCGCACTTCTCGAAGCAAGGCAATGCGTCGTCGAGTTCGAAGGCCGCGGCGGCGCAGCCGACGGTGGTGGATTCGTGCGATACGCCGGTTGCGACGGCGGAGCTCGCTGAAACCGGCCGCGCGAGCGTGACCGCTGCCGATGCAGGTAAGGCGGCAGAGTCTGGAGGAAGGGAGGCGGCGACGTGCGATTTGACGGTGACGTCATCTCCTGGCGGTTCAAGCGGGAGCGCGGAACCGGTTCAAAGGGAACTGGACCGGAAGAGGAAGGGGAGAGAACCGGAGGAATCGGAGTTTCAGAGCGAGGACGTCGATTTTGAATCTCCGGAAGCTAAAAAACATGGGCGTGGTTCTACATCTACTAAGAGATCTCGTGCTGCAGAAGTCCACAATCTCTCCGAGAGGAGGCGTCGAGATAGAATTAATGAGAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCAGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCGCATTTGGGACCGAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCCCCTGATTCATCCAGAATGAAAGCATCAAATCAGTCAGATAATAATATGCTTAACGCACTTGGTACACAAGGTCCAGATCAATCACATATCCCAAACTTCACTGATCCTTATCAACAATACGTCGGCCTCCAACAGGTGCAGTTACAATTGATGCAGGCAATGAACCAACCAAATGTGAGCAATGCTACTACCAGTAGGAATGAAGAGAATCCACAAAAACATCGGTCAGACGAAACATGA 1518 0.5152 MNHCVPDFEIQMEDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMHSQNHRPLRKPPHTLPSGGGDGVIPAREIRSSEHENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADMLNPPTNAIASQSHSSAAIQSSIRTTELRHPAPRPPIPPSRLPVPAAKRMQNFAHFSKQGNASSSSKAAAAQPTVVDSCDTPVATAELAETGRASVTAADAGKAAESGGREAATCDLTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFQSEDVDFESPEAKKHGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMQPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMKASNQSDNNMLNALGTQGPDQSHIPNFTDPYQQYVGLQQVQLQLMQAMNQPNVSNATTSRNEENPQKHRSDET* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02428 505 FunFam Basic helix-loop-helix transcription factor 289 352 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 174 193 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 250 266 - -
Phac7g02428 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 360 IPR036638 GO:0046983
Phac7g02428 505 MobiDBLite consensus disorder prediction 231 246 - -
Phac7g02428 505 PANTHER TRANSCRIPTION FACTOR PIF3 21 177 IPR044273 GO:0003700|GO:0006355
Phac7g02428 505 MobiDBLite consensus disorder prediction 478 493 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 430 460 - -
Phac7g02428 505 Gene3D - 289 352 IPR036638 GO:0046983
Phac7g02428 505 SMART finulus 300 349 IPR011598 GO:0046983
Phac7g02428 505 CDD bHLH_AtPIF_like 294 357 IPR047265 -
Phac7g02428 505 Coils Coil 300 320 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 423 460 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 210 309 - -
Phac7g02428 505 Pfam Helix-loop-helix DNA-binding domain 298 344 IPR011598 GO:0046983
Phac7g02428 505 MobiDBLite consensus disorder prediction 174 189 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 274 309 - -
Phac7g02428 505 MobiDBLite consensus disorder prediction 478 505 - -
Phac7g02428 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02428 Phac-Chr7 28493566 28501642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02428 1 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.420 1.44e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac7g02428 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02428 - - gmx:100788491 680.248