Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02352 ATGTCTACCTCTGCAGCTTCTCTTGCACTCCCCACTCTCACTCTCCGAACACGCTACCCTACCTCTTCTCCCAAATGTTTCTCCTCCTCTCTCTCCCTCACCCCTAATGCCAAACCCATCTCCATTTCTAACGTTTTCCTAAAACCCACCTTATCCCTCTCCTCGCGCTTCCTTCCCCGCGTCGCTGTCTCCTCCGAGTACGACCAGGAAGAGGGCACCTTCAGCTCCGGCCAGAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGCAACCTTCCCTTCAGCGTAGACAGTGCGCAGCTCGCCGAGATCTTCGAAAACGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACGACCGGGAGAAGCAGAGGATTTGGGTTTGTGACCATGTCTTCGGTTGAGGAGGTTGAAACGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCTCCGGCTCGGAATGAGAGCACGTCTCGTTTTAGAAGTTCTCCCCCCAGAGGTGGTGGTGGTGATTTTTCAGATAGTGAAAACAAAGTCCATGTGAGTAATCTTGCTTGGGGTGTTGACAATGGAACACTGGAGTCATTCTTTGGGGAATACGGAAAGGTCCTGGAAGCAAGGGTAATCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCAGATGAGGTCAGCAGTGCAATTCAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCGCAATAGCTGATTCCAAGCCCAGGCGGCCTCGAGGATTTTAA 828 0.5169 MSTSAASLALPTLTLRTRYPTSSPKCFSSSLSLTPNAKPISISNVFLKPTLSLSSRFLPRVAVSSEYDQEEGTFSSGQSFSPDLKLFVGNLPFSVDSAQLAEIFENAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVETAVQQFNGYELDGRALKVNAGPPPARNESTSRFRSSPPRGGGGDFSDSENKVHVSNLAWGVDNGTLESFFGEYGKVLEARVIYDRDSGRSRGFGFVTYSSADEVSSAIQSLDGVDLNGRAIRVAIADSKPRRPRGF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02352 275 SUPERFAMILY RNA-binding domain, RBD 161 273 IPR035979 GO:0003676
Phac7g02352 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Phac7g02352 275 SMART rrm1_1 85 158 IPR000504 GO:0003723
Phac7g02352 275 SMART rrm1_1 190 263 IPR000504 GO:0003723
Phac7g02352 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Phac7g02352 275 MobiDBLite consensus disorder prediction 156 187 - -
Phac7g02352 275 Gene3D - 64 185 IPR012677 -
Phac7g02352 275 Gene3D - 186 275 IPR012677 -
Phac7g02352 275 CDD RRM2_NsCP33_like 190 265 - -
Phac7g02352 275 PANTHER OS02G0815200 PROTEIN 30 268 - -
Phac7g02352 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Phac7g02352 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Phac7g02352 275 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02352 Phac-Chr7 27379417 27382240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02352 86 271 Eukaryotic Initiation Factors Gene Family AT4G34110 32.796 1.17e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02352 - - var:108324910 421.779