LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g02318	ATGGGTTCAGATAGATCAAGATCTGTGAGATTTCGAGATGAACTTGAGACAAATAAGTTAATGGACAACAAAGAAAAACACTTGTCATTGGTGGCCTATGATGAGACTAGTGACAAACACAAGGTTGGAAAGGATGGCATAGGCAAGTCCGGTGATGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGATTATGATTCAACAGAGATTTTGATATTGGATCCAAGGGGATCTACAGTAAATACATGGAATAAAATTTTCTTAGCAGCTTGTTTGCTTTCATTGTTTGTGGATCCCCTTTTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCAACTGGTCTTGAAGTGTTCCTCACCATAATCCGGTCTTTGATAGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAAATTGCATCAAACTACATGCGAAAAGACTTCTGGCTTGATCTAGTGGCTGCTCAACCACTTCCTCAGGTATTAATTTGGGCCGTAATTCCAAATCTAAAAGGGTCTCAAATGATTGCTTCAAGGCATATTTTGCGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCGTCAAGGCAAATGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTGCACTGCAGCACCCACTTTGCCAGTATCATTATCTTGATTGCCAAAGCATCGCTGACCCAAATAGGATTGCTTGGTTAAGATCAAGCAATCTCTCAAGCCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTACTGATGCTCTAAATTTGGAAGTTACAGCCTCAAAATTCTTCAACAAGTACTATTACTGTCTGTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAAAATCTCTTAACAGGCACACGTGTTGCAGAGATCAATTTTGCTGTAATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTACTCATTGGCAATATGCAAACCTACTTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGAACAGATACGGAAAGATGGATGCATCACAGGCAACTCCCTCGTTACCTGAAGCAAAATGTGCGACGTCATGAACAATTCAGATGGGTTGCTACTAGGGGAGTTGATGAAGAAACTATTCTCAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTTAATCTCGTTCGACAAGTACCACTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGGGCTTGTGTGGTTCGCGAAGGTGATCTTGTGAATGAGATGCTTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGACTTGGCTCTGGTGACTTCTGCGGTGAAGAGCTTCTGCCATGGGCTTTGGATCCTCGTCCAACGGTTGTCCTTCCTTCCTCAACTCGCACAGTGAAAGCTATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGAGGACTTGATGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAACAACTGAGGCATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTATAAGAGAATAAAGGAGACAAGTGAGCTCAAGAGAAAGGAGAACATGATGATGGCCTTTCTGCCTGGAACTGGCACTGAACATTTCTCTGCACCTCTGCAGGCTCCTATGGGCACAATGTATGCTTCAAAACTAGCATTCAGCCCAAGGAAAGGTAGAAGCCTGAGATACGGGCCTGAACTTGACATTCTTGGCTCACTGAGGAAGCCCCTTGAACCAGACTTTACTGATGATGATGATGATGACAGTTGA	2121	0.4286	MGSDRSRSVRFRDELETNKLMDNKEKHLSLVAYDETSDKHKVGKDGIGKSGDGRELSRVFSEDYDSTEILILDPRGSTVNTWNKIFLAACLLSLFVDPLFFYLPVAKKDKCIDMSTGLEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASNYMRKDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHILRLVSIFQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACALQHPLCQYHYLDCQSIADPNRIAWLRSSNLSSLCDQNSDFFQFGIFTDALNLEVTASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLMFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRIKETSELKRKENMMMAFLPGTGTEHFSAPLQAPMGTMYASKLAFSPRKGRSLRYGPELDILGSLRKPLEPDFTDDDDDDS*	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g02318	706	Gene3D	Jelly Rolls	472	592	IPR014710	-
	Phac7g02318	706	CDD	CAP_ED	474	605	IPR000595	-
	Phac7g02318	706	SMART	cnmp_10	474	605	IPR000595	-
	Phac7g02318	706	SUPERFAMILY	Voltage-gated potassium channels	73	396	-	-
	Phac7g02318	706	FunFam	Cyclic nucleotide-gated ion channel 1	472	590	-	-
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	343	360	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	137	146	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	369	380	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	437	444	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	254	264	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	PRINTS	EAG/ELK/ERG potassium channel family signature	387	396	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Phac7g02318	706	Gene3D	Helix hairpin bin	400	465	-	-
	Phac7g02318	706	Pfam	Ion transport protein	81	401	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Phac7g02318	706	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	56	674	-	-
	Phac7g02318	706	ProSiteProfiles	cAMP/cGMP binding motif profile.	474	559	IPR000595	-
	Phac7g02318	706	Gene3D	-	85	398	-	-
	Phac7g02318	706	SUPERFAMILY	cAMP-binding domain-like	403	596	IPR018490	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g02318	Phac-Chr7	26839648	26844525	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g02318	48	701	Ion Channels	AT2G28260	64.373	0.0	878

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g02318	K05391		-	gmx:100815543	1311.59