Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02224 ATGAACAGTAGCACCACCAATAAAGACCGTGGTGGGTTCACATATGGAGTAGTTTTTGTAATTGGGTCTGTGGTCTTACTTCTCACGGTGGCTTTTGCATGTGTGCGCCTTCACATAGCTCGAGGTCCCAACATCCTTAACAGTTTGGCTGGAATTCCACCATCTCCTCCCACAAGAGATGAAGACTCAGCTGAACAAGGCCTTGCCCTAAGGCTTCATCAAATTGACACAAGTTTTGAAAGCTATCCCAAACTTCTATACTCCCAACTAGAGAAGGGTTCAAGTTCAAGCAACATCTGTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAGGGTGACATGTTGAGATTACTTCCTCACTGTCACCATGTTTTCCACCTTGCTTGCCTTGATCCATGGCTTAGTTCAGAGGAGTCTGTGTTATTGCTTGTGAGCTTTATTATTCTGACCCTAGTCGTCACACTTGCTGCTTATTTGTGCTCTAGTGATATTCCACGCACTGTTCCTTCTGTTCCTGTAGGTGTGACACAGTCCAACCACACCACAATCACTGTGGAGGCACCTGAGCCATGCATAGATCAGAGTGTCTGCAGTTTTCCAAGTCTCCAATTTTCGAAAGCCAAATTGTGTAGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCGATATGCTTGATGGATTACAAAGAGTCTGATTCCTTGAGAGTGCTGCCTGCCTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATTTGACCTGTCCAGTTTGTAGGACGCCAATAACCCTCTCAGATGTAAGCAAAGCTTTGTAA 831 0.4525 MNSSTTNKDRGGFTYGVVFVIGSVVLLLTVAFACVRLHIARGPNILNSLAGIPPSPPTRDEDSAEQGLALRLHQIDTSFESYPKLLYSQLEKGSSSSNICSSSCSICLGDYKEGDMLRLLPHCHHVFHLACLDPWLSSEESVLLLVSFIILTLVVTLAAYLCSSDIPRTVPSVPVGVTQSNHTTITVEAPEPCIDQSVCSFPSLQFSKAKLCSSTSSSSSSCSICLMDYKESDSLRVLPACGHFFHVKCVDPWLRINLTCPVCRTPITLSDVSKAL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02224 276 SMART ring_2 104 165 IPR001841 -
Phac7g02224 276 SMART ring_2 222 263 IPR001841 -
Phac7g02224 276 Pfam RING-like zinc finger 104 132 IPR001841 -
Phac7g02224 276 SUPERFAMILY RING/U-box 103 140 - -
Phac7g02224 276 SUPERFAMILY RING/U-box 215 269 - -
Phac7g02224 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
Phac7g02224 276 ProSiteProfiles Zinc finger RING-type profile. 222 264 IPR001841 -
Phac7g02224 276 Pfam Ring finger domain 221 264 IPR001841 -
Phac7g02224 276 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 144 267 IPR045899 -
Phac7g02224 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 272 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02224 Phac-Chr7 25816400 25818264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02224 195 265 C3H Transcription Factor Family AT5G06490 52.703 4.54e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02224 - - vra:106770594 379.407