Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02116 ATGAACTGTCTTCACAATCTTTCTCGATTCTCTCTTTTACCCTTCGAAACGCTTGCCACGCGCCACCGCAACAACCTTCCCCTGTCCCTGCGAATCGTCACTAATTCTCATCATAATCCAAGTATGGCGCTCAAGGCTGCTTCAGGTTCTGTACCAAGTGCAGACAAAAGTAGTGCGAACAAGGAAGAGGAGAAGTCTGAGACATATTCTCATAACATGACAGAAGCCATGGGTGTTGTTTTGTCTTATAAGCATGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGACGATGTTGAGAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCGGACCTTGAGGACTTTGATGCATTTGATCTTCGGATGCGGCTTCCAGCTGTAGTTGGCAAATTATATAAGGCAGTAAATTCCAACGGAGGTGTGACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAACGGCCTACATGTTTTGGGTTCTGGGTTATACATTTAAGGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGCTTTCCGAAACTAGATGCCATTAAAAGTGCGACGGCAGACATTCTTACAGGCCTCAGTAAGAAACCTGTCACTTTGTCATGGGAAGACAGCAGTTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTAAATTTTGATGACAAATCGGGCTTGTGGTACCTCGAGAGGGAATTACCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTCATTCAAGTCCGTGATAATAGCAGCAGTGATCGTGTTTCCCTTCGGGAGAGATTCTCTTCTGATGATCCTGATCTTACAACGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTTCTGATGAGGATCTGTGA 1038 0.4432 MNCLHNLSRFSLLPFETLATRHRNNLPLSLRIVTNSHHNPSMALKAASGSVPSADKSSANKEEEKSETYSHNMTEAMGVVLSYKHELGMNYNFIRPDLIVGSCPQTPDDVEKLRRIGVKTIFCLQQDSDLEDFDAFDLRMRLPAVVGKLYKAVNSNGGVTYIHCTAGLGRAPAVATAYMFWVLGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLSWEDSSCSRVEISGLDIGWGQRVPLNFDDKSGLWYLERELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFIQVRDNSSSDRVSLRERFSSDDPDLTTEERLRIKEFLEACSDEDL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02116 345 CDD DSP_laforin-like 89 209 IPR045204 GO:0019203
Phac7g02116 345 Gene3D Immunoglobulins 221 308 IPR013783 -
Phac7g02116 345 Gene3D Protein tyrosine phosphatase superfamily 72 220 IPR029021 -
Phac7g02116 345 MobiDBLite consensus disorder prediction 42 69 - -
Phac7g02116 345 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 204 IPR029021 -
Phac7g02116 345 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 132 343 - -
Phac7g02116 345 SMART dsp_5 90 213 IPR020422 GO:0006470|GO:0008138
Phac7g02116 345 SUPERFAMILY E set domains 221 304 IPR014756 -
Phac7g02116 345 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 140 198 IPR000387 GO:0016311|GO:0016791
Phac7g02116 345 CDD E_set_AMPKbeta_like_N 222 303 - -
Phac7g02116 345 Pfam Glycogen recognition site of AMP-activated protein kinase 222 306 IPR032640 -
Phac7g02116 345 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 218 308 - -
Phac7g02116 345 Pfam Dual specificity phosphatase, catalytic domain 130 201 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02116 Phac-Chr7 24231045 24239680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02116 89 345 Protein tyrosine phosphatase (PTP) family AT3G52180 63.028 1.11e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02116 - - pvu:PHAVU_007G145000g 684.1