Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g02011 ATGGATCTTGCAAGCAGAAGATACTTGATTTATGAGTCACAATCACAAGCACTTTCTCCGGTCACAAGTCCAGGAGGTTCATTCTTTCATCCTCATCAACATTCTTCTAGCACTAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACAGAATCGATATTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAACTCGTGGACTAGATGAGGCAATGATCCGGTTAATCCCAGTGATTCAATACAAGACACAAGGGGATGGAGACTTTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAGGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCCTGACAAGCAGATTCCACATGGAGCAGCTTCTTGCCCTAAGATCTTCTTCCCCTCCGCATCAGACTCCACCTCGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATATCCATGATAGAAGTCAAAATTTGCAAGAGAGAGGAAATGCTTTGGAGTTACCATTACCAACATCTCTTATTAGTTCTTCTACGCCAAGGAAATTGGAACATGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAAGATAACCAGTTCTCAGTGCAACCAATCCGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAGGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCTCCACTGAAGGCTGCAGTGGTAGTGGTAGTGGTAGTATTAGAGTCAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1068 0.4316 MDLASRRYLIYESQSQALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTETRGLDEAMIRLIPVIQYKTQGDGDFGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHMEQLLALRSSSPPHQTPPRENLIGGDEDFVVIELGNIHDRSQNLQERGNALELPLPTSLISSSTPRKLEHGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSSTEGCSGSGSGSIRVKRSFFSFGHGSRSRSSVQPVSLEP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g02011 355 FunFam E3 ubiquitin-protein ligase ATL6 92 174 - -
Phac7g02011 355 Pfam Ring finger domain 125 168 IPR001841 -
Phac7g02011 355 SUPERFAMILY RING/U-box 113 174 - -
Phac7g02011 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 173 IPR013083 -
Phac7g02011 355 SMART ring_2 126 167 IPR001841 -
Phac7g02011 355 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Phac7g02011 355 CDD RING-H2_EL5-like 125 168 - -
Phac7g02011 355 PANTHER RING-H2 FINGER PROTEIN ATL16 29 351 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g02011 Phac-Chr7 22180446 22182127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g02011 31 355 C3H Transcription Factor Family AT1G04360 54.648 6.86e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g02011 - - gmx:100775286 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02288 1 32607260 32608436 Phac7g02011 7 22180446 22182127 PCT