Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01922 ATGGAGGGAAAAACTGAGGATGAAGTGTTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGACGAGGAATCTGTAGTTCTTGAAATAGATGATGGAGTGAATCTTGAGGAGCCGTTAACAGAAGAGGAAATCCAAGATCTTATTTCAGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGAAGCAAAATCTTCAGGAAGAGGATTTGGAAACTGCTGTTGCTAATGAGATGGCTGCTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTTCCTAGCCTTTATAAGTTGATTGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAAGAGAAATCACTGGGTTGGCTCTGTGGCAACTTCAGAAATTGCTGAGTCAATTGCTGATGCTGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAGAAAAAACTGTGTGATGAAACCCAGGAGCCAGTGAAGAATGAAATTGAGGGTGATTGGAATATGTTCAATAAATTAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCGGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCATTTGAAACATAGGAGGCATAAAAAGATAAGTAAACAGCGAGAAATGAGCACACCTATCCTGTTGACAGAGAGCCCCACACGGAAACCTTATGCTGATCATTTAAACCCTGATACGAAAGAAGGAACTAATGATGATGGGACTGATAATATTAAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCTTACAAGTACTGGTGGCTTGTCAGATCCACCCAAATCCTTAGCAGATGGTGTTATTGAACAGAGAGGAATCAAACGTGTATGCAGTGGTGAGCTTGATGCTGATAATAAAAAATATCGGCTCATTGTTATTGATAGTGATGATGAAGGGGTCACTAAGGAGAAATTAGATTGCAATACTCACGAACTAAAAGAAGATTTATGTAACAATGGTACTGGTTCTCTTCCTTCAGAGTGTCCGGATGAAAATTTTTTGTGCACAGTTTGTGATAAAATGGCTCTTGAAGTGCATCCACACCCTCTCTTGAAAGTAATTACTTGTGGAGAATGCAACCGCTTATTAAAAGAAAAGGCATATCAAAAGGATCTGGGACAAGATTGTTCGAAGGGTTACTGTACCTGGTGTGGAGGAAACAGTGAATTGGTTAGTTGTAAATTATGCAATATTTTATTTTGCACCAAGTGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTTCTGGAACTCAGGCCACTAGCTGGCATTGCTGTTGTTGCCATCCAAATCTTTTGCAAAGACTGTCCTTACAACTAGAGAAAGCTGTGGGTTCTGCTACCATAGTAGTTTCTAGTTCTAGTAGTGATTCAGATGATTCAGATGATTCAGACGATTCAGATAATTCAGATGATTCAGATGCACAGATTAATGTTACAATGAGCTCCAAACGAAGACCCAAAAAGAAGATTCGCAGGATACTTGATGATGCTGAATTAGGAGAAGAGACGAAAAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGGCAGTTTTCTGCTTCATCAATTGAGATGAGCTCTGACGGGTGTAATGGAAACTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATCATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTTATAGCTTTTTTGTACACGGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTAACACCTGTGAATGTGCTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTTATGCTTGAAGATGTACCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGGGGTATCTTTTTGATTGGTTATACCGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGGGAAATTTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTATGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACACAAGCGTTGAAACAAGTAAAAAGCCAGAGAAGAATTGCGCTTACTGGGTCACCCCTTCAAAACAATCTCATGGAGTATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACAGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCCTGCAGAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGCTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGAAGAAGATGCTGTTGAGAATTTTCTCGTGGATGATAGTTCCAGTGACGAAAATTCTGATTATAATGTTCTTGCAGGAGAGAAGATAGGGTTTGGAAATGACTTACTGCAAAGGAAAGATGGTAATGGCTATTTTCTGAAGGGTTGGTGGAATGACCTTCTTCATGGAAAAATATATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGAAAACGAGGAAAGTTCTGGAAGAAGGGGAAAGATTGGTATAGGTTGGACGGGAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCTGGCTCCCTGGGTATAAATCTTCATGCAGCTAACCGAGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATTTATCGATCATGGAGGTACGGGCAGACAAAGCCTGTATTTGCTTATCGGTTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGACGACAACCCTGAGACTTTAGGCAATCTAGGTCAAGAAAACGAGCATCAAGACAACCCAATTTTGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAATTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCATGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCATTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCTCACGTATCAGAAACCTGCAACATCTTGCCAAGTAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACAAACCTTGCGCACATGTTGACACTTCGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4434 0.412 MEGKTEDEVLDIESASSGSFNDDSDDEESVVLEIDDGVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQEEDLETAVANEMAAFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKKRNHWVGSVATSEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKNEIEGDWNMFNKLVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIHLKHRRHKKISKQREMSTPILLTESPTRKPYADHLNPDTKEGTNDDGTDNIKGFDASHHLDKEKLTSTGGLSDPPKSLADGVIEQRGIKRVCSGELDADNKKYRLIVIDSDDEGVTKEKLDCNTHELKEDLCNNGTGSLPSECPDENFLCTVCDKMALEVHPHPLLKVITCGECNRLLKEKAYQKDLGQDCSKGYCTWCGGNSELVSCKLCNILFCTKCLKKNLGVELVSGTQATSWHCCCCHPNLLQRLSLQLEKAVGSATIVVSSSSSDSDDSDDSDDSDNSDDSDAQINVTMSSKRRPKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRAKGGIFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKEEDAVENFLVDDSSSDENSDYNVLAGEKIGFGNDLLQRKDGNGYFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTVSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLGNLGQENEHQDNPILVGHSLKHTAPHSNGSNYSDKLMESLLSKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPHVSETCNILPSKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01922 1477 Coils Coil 1360 1380 - -
Phac7g01922 1477 Gene3D - 689 970 IPR038718 -
Phac7g01922 1477 CDD ADDz_ATRX 468 566 - -
Phac7g01922 1477 PANTHER RAD54-LIKE 17 1475 IPR044574 GO:0016887
Phac7g01922 1477 Pfam SNF2-related domain 739 1039 IPR000330 GO:0005524|GO:0140658
Phac7g01922 1477 CDD SF2_C_SNF 1112 1255 - -
Phac7g01922 1477 SMART ultradead3 712 933 IPR014001 -
Phac7g01922 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1124 1292 IPR001650 -
Phac7g01922 1477 MobiDBLite consensus disorder prediction 353 380 - -
Phac7g01922 1477 Coils Coil 83 103 - -
Phac7g01922 1477 MobiDBLite consensus disorder prediction 326 380 - -
Phac7g01922 1477 Coils Coil 107 127 - -
Phac7g01922 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1312 IPR027417 -
Phac7g01922 1477 Pfam Helicase conserved C-terminal domain 1120 1244 IPR001650 -
Phac7g01922 1477 MobiDBLite consensus disorder prediction 594 608 - -
Phac7g01922 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 970 IPR027417 -
Phac7g01922 1477 ProSiteProfiles ADD domain profile. 460 592 IPR025766 -
Phac7g01922 1477 Coils Coil 49 76 - -
Phac7g01922 1477 Gene3D - 981 1327 IPR027417 -
Phac7g01922 1477 SMART helicmild6 1147 1244 IPR001650 -
Phac7g01922 1477 MobiDBLite consensus disorder prediction 587 624 - -
Phac7g01922 1477 MobiDBLite consensus disorder prediction 1 28 - -
Phac7g01922 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 921 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01922 Phac-Chr7 19783703 19820594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01922 641 1297 RAD5 or RAD16-like Gene Family AT5G43530 22.949 3.49e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g01922 SNF2_N 5.7e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01922 K10779 - gmx:100818409 2538.84