Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac7g01894 | ATGACGACACCGCCGTCTTCCTCCTCAGCTTCGGAATCTCAGTTTTCCTATTCAAACCCTTCCTATTTCCCCGTCCCCTTTCACCTGCAGCAACCAGCAACTACTCACTACGCTGCACCCTACGTCGCCGCCCCTTCCGTGCAAATCCCCGCTCCTCCCGTCGTCGGTCCGGTTGCGCCGGCACCAGTTCCCGCTGTATACTCCGCCGTGCCTCAATACCAGGCGCAGCAGCTATTTGAGAGGGATGCGCAAATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGCAGCGATGTGGAACACAAAACCGATGCCAAAAGGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAATCATGGGAGGATCCTATCCTCGCTGAGTGGCCAGAAGATGACTATCGGCTCTTCTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCTTTTTCCCGATTTCCTTCCTTTAACATGGCGCGAGTTGTCAGAGATAAGCGTACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGACCAATAAAACTACGCAAGAGTAACTGGAAGGAGAGGACTGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAGAAGAAACCAAAATTGTCCAGGAAAGGTGTGCTGCACAAGTGA | 735 | 0.4912 | MTTPPSSSSASESQFSYSNPSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPVAPAPVPAVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKRKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALEKQKNHIQKKPKLSRKGVLHK* | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac7g01894 | 244 | Gene3D | - | 83 | 228 | IPR012677 | - | |
Phac7g01894 | 244 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 63 | 222 | - | - | |
Phac7g01894 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | IPR000504 | GO:0003723 | |
Phac7g01894 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 214 | IPR000504 | GO:0003723 | |
Phac7g01894 | 244 | CDD | RRM_RBM42 | 130 | 212 | IPR034215 | - | |
Phac7g01894 | 244 | FunFam | RNA-binding protein 42 | 71 | 221 | - | - | |
Phac7g01894 | 244 | SMART | rrm1_1 | 137 | 210 | IPR000504 | GO:0003723 | |
Phac7g01894 | 244 | MobiDBLite | consensus disorder prediction | 225 | 244 | - | - | |
Phac7g01894 | 244 | SUPERFAMILY | RNA-binding domain, RBD | 119 | 216 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac7g01894 | Phac-Chr7 | 18681636 | 18684794 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac7g01894 | 138 | 236 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 28.000 | 2.20e-07 | 49.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac7g01894 | K25079 | - | gmx:100800281 | 427.943 |