Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01862 ATGGCCATCGCGGAGGAGGAGCAAGTATCTGCACTGAAGCAAAAGCTGCGCGAGTTGGTCGAGAGTATCGTGGACGGGGACGATTACACCGTTCACGCTGCGGACAAGGCTATCCATGCTCTTTCTGCCCTCAGGGACTTGAAGTCCACCACTTTTCTCTCAACCAACATGGAACACACACCCGTTCCTTTGCACTTTCGATGCCCTCTCTCTGATCACTTGATGACAGATCCTGTTATCTTGACCACTGGACAGACTTTTGATCGTCCGTTCATCCTGAAGTGGCTGAATGAGGTCAACGGAGTTTGCCCTCAGGCCCAAGAAGTCCTCTCTCTCTGTATTCTCACTCCAAATTTCTTGCTCCAAGGCATGATCTCAGATTGGTGCAAAGCGAAAGGAGTTGACATACCAAAGCCCATTTTTGACATTCACGACGAACAGCTAACCGAGGCACACAAACACCGTTTGCGTTCACTGCTCTTCAAACTGTCACTGTCACTTTCTGAACAGAAAGAAGCTGCAAGAGAGCTTCGTCAGTTAGCAAAACGAATGTCCGCAGTTCGAACACTCTTTGGAAACTCACAACTGATTAATCTTCTGATGCGTCCGGTATCACCCGGCACAGCTTCTATGGACCCTAATCTCCACGACGATTTGATCGCAACTATTCTAAATATCTCAATAAACGATACAAACAAGAGGTTGTTAGCAGAAAACGAAAAAATCATCAGCTTTCTGATTGATTCATTGAAATCTGGAACAGTTCAGACAAGAAGCAATGCAGCTGCAGCTTTTTCCTCAATGTCATCTCTTGATTCAAACAAGCACATAATTGGAAAATCAGGCGCTATAAAATACTTGGTGGATTTACTTGAAGAGGGAGACCCATTCGCCATGAAAGATGCTGGGTCAGCCTTGTTCAAACTATGCTTTGCGCGTGAAAATATAGCGAGGACCGTGCGAGAAGGGGCAGTGCAGGTTATTCTTGGGAAGATCGCTGACCATGTTCTTGTTGATGAGTTGTTGTCACTGTTGGCACTTCTGGCTACACATACTAAGGCGGTTGAAGCGTTGGTGAATCATGGTGGTGTCCGTTTCTTGCTTGACATTTTGAGGGAGAGCACAGTAGAACGCATAAAGGAAAACTCTACTGTAATTCTACATCTAATCTGTTACCATAACAGAGAAAAAAGGGCGGAAATTAGAGAGGAAGAAATGGCGAACGGCACACTCTCTAGGCTTGTTCAAAACGGGTCCTCAAGGGCGAAAAGGAAAGCTAGCTCCATCCTTCACTGTCTTGACATAGATCAATCCACTTCGCACAACAATCCACTTCCCTCAGTTACAATAAACTCTACTTCGTCATCAAATTAG 1374 0.4556 MAIAEEEQVSALKQKLRELVESIVDGDDYTVHAADKAIHALSALRDLKSTTFLSTNMEHTPVPLHFRCPLSDHLMTDPVILTTGQTFDRPFILKWLNEVNGVCPQAQEVLSLCILTPNFLLQGMISDWCKAKGVDIPKPIFDIHDEQLTEAHKHRLRSLLFKLSLSLSEQKEAARELRQLAKRMSAVRTLFGNSQLINLLMRPVSPGTASMDPNLHDDLIATILNISINDTNKRLLAENEKIISFLIDSLKSGTVQTRSNAAAAFSSMSSLDSNKHIIGKSGAIKYLVDLLEEGDPFAMKDAGSALFKLCFARENIARTVREGAVQVILGKIADHVLVDELLSLLALLATHTKAVEALVNHGGVRFLLDILRESTVERIKENSTVILHLICYHNREKRAEIREEEMANGTLSRLVQNGSSRAKRKASSILHCLDIDQSTSHNNPLPSVTINSTSSSN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01862 457 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Phac7g01862 457 CDD RING-Ubox_PUB 63 111 IPR045210 -
Phac7g01862 457 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Phac7g01862 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 135 IPR013083 -
Phac7g01862 457 Gene3D - 159 445 IPR011989 -
Phac7g01862 457 SUPERFAMILY RING/U-box 56 137 - -
Phac7g01862 457 SMART arm_5 229 270 IPR000225 GO:0005515
Phac7g01862 457 SMART arm_5 144 182 IPR000225 GO:0005515
Phac7g01862 457 SMART arm_5 271 311 IPR000225 GO:0005515
Phac7g01862 457 SMART arm_5 351 392 IPR000225 GO:0005515
Phac7g01862 457 Coils Coil 167 187 - -
Phac7g01862 457 PANTHER U BOX DOMAIN-CONTAINING 9 433 - -
Phac7g01862 457 SUPERFAMILY ARM repeat 166 433 IPR016024 -
Phac7g01862 457 Coils Coil 2 22 - -
Phac7g01862 457 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01862 Phac-Chr7 17468171 17470035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01862 124 430 U-box Gene Family AT3G07360 50.158 1.74e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01862 - - gmx:100806132 534.258