Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01828 ATGGAGAAGAAGAAGCTCAACCTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCAATCTCTCAAGGACAAGATTCACTGTGGATGATGAATTTGAGGACTGGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCCCCAAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATTGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGAGCCGGAATGCACTTATTATTTGAGAACTGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATTTGCAGGAGGAATTACAAATTGGGCAAGGGCATCATACATTCCCAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCAGTGCCGGGTTGGAGTGCATACAGTGGTCAAGTGGGATCAATCTCTAATTCAGACAGTCTTCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACACAGGAACACATGGAGCATATTCTCAATTCCGTTCTGGCACTGTTCCGGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCCGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACACGAAAGGCTAATTCCTACTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGTGAGTTGGGTTCTTCCTATGGAGTTCTATCCACCTAGTTTTTTTTCATAG 1104 0.4592 MEKKKLNLIIPNPQPHGIIPRRNSPISQGQDSLWMMNLRTGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSFAGGITNWARASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQVGSISNSDSLQQAMRNGQTYGTSRQGELANTGTHGAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPHERLIPTPDCVLSPMGLPLRPVSWVLPMEFYPPSFFS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01828 367 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Phac7g01828 367 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Phac7g01828 367 Gene3D - 130 180 - -
Phac7g01828 367 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Phac7g01828 367 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Phac7g01828 367 Gene3D - 284 340 - -
Phac7g01828 367 Gene3D - 51 129 - -
Phac7g01828 367 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Phac7g01828 367 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Phac7g01828 367 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Phac7g01828 367 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Phac7g01828 367 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Phac7g01828 367 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Phac7g01828 367 FunFam Zinc finger nuclease 2 51 128 - -
Phac7g01828 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Phac7g01828 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Phac7g01828 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Phac7g01828 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Phac7g01828 367 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Phac7g01828 367 PANTHER PROTEIN PHOSPHATASE RELATED 42 351 - -
Phac7g01828 367 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01828 Phac-Chr7 15926314 15931921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01828 44 78 C2H2 Transcription Factor Family AT3G02830 51.429 3.13e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac7g01828 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01828 - - ccaj:109816515 665.996