Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01707 ATGGCTTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGGAGGAAGTGCATGCTAGATTGCCTTTTCGCCCCATATTTCCCTCCAGAGGAGCCTCAGAAGTTTGTGAATGTGCACAAGATCTTCGTGCTCCAAAGAGAAGTTTTTAAGCTCCAGAAGGAACTTGATGCTACAAATATTGATTTGATCCGCTACAACACTTGCAATGAAATGTCAAATAGTAGTAATCATCATGAAGGAAGAAGTAAGATGATTAGTGATGATGATGGTGGTGGTTCCTCACACGGTTTAAGTTTCTATTATGCTTCTTCTTCTGCTAATTGGAACAATGGTCCTTCTTATGAAAATGGACAAGGTGAGATGCAAATGTGCAGATCAATATTGTATGAAATGATAGGAAATAGGATTTGTCCTGACAGCATCACTTGTCGGGTTATAGTTGATGGATATGCCAGGGATGGAAAACATCTTTCAGCCTTGAATACTGAAGGTAAGCCATTTGCTGCTAGAAGTTTTCTGCATAGGATATCTGAGGATGGTTATACACCTAAAATGAACACATACAATAAACTAGTTGAGTCTCTATGTGAATTCAATAATGTGGAAGAAGCATTAATTTTGAAATCTGATATGGAAAATAAGAGCATGAAAGTGAATGTTGCTGCATATAGAGCTGTTATAATCTGTTTGTGTAGAGTAAAGAGGACTGTGGAAGCTGAAGTTTTGTTGGAGGAAATTATTGGATCAGATATGTTACCTGATGTAGAAATAAGCAGGGCAGTAATAAAAGGGTATTGTAAGGAAAATAAGTTGATGGAGGTTGAGGATAAGCTACTGAAAATGGGGTATGTTCCTAACAAGTTAACATGCAGGTATGTGATCCATGGATTGCAGAGAGCTATGGAGCTAGATGATGAGATTTTGAACCATAAGTTTGAAATCATAGCAAATGGAAATTTCAATGAGGAGTTTGTTCAGAGTGCGGGAAAATCTATTGAAATCCAGAAAAAGGTTTGTGCTAAGATTAAGCTTGTGAAGACTGGTTCCCTTTCAGTGACTGAACTTGGAAAGATGAAATCCTACATTTTGAACTCCCAATCACAAGGACTCTAG 1125 0.3804 MASSSYSNSPCAACKFLRRKCMLDCLFAPYFPPEEPQKFVNVHKIFVLQREVFKLQKELDATNIDLIRYNTCNEMSNSSNHHEGRSKMISDDDGGGSSHGLSFYYASSSANWNNGPSYENGQGEMQMCRSILYEMIGNRICPDSITCRVIVDGYARDGKHLSALNTEGKPFAARSFLHRISEDGYTPKMNTYNKLVESLCEFNNVEEALILKSDMENKSMKVNVAAYRAVIICLCRVKRTVEAEVLLEEIIGSDMLPDVEISRAVIKGYCKENKLMEVEDKLLKMGYVPNKLTCRYVIHGLQRAMELDDEILNHKFEIIANGNFNEEFVQSAGKSIEIQKKVCAKIKLVKTGSLSVTELGKMKSYILNSQSQGL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01707 374 NCBIfam pentatricopeptide repeat 226 259 IPR002885 -
Phac7g01707 374 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 163 312 - -
Phac7g01707 374 Pfam Lateral organ boundaries (LOB) domain 10 60 IPR004883 -
Phac7g01707 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Phac7g01707 374 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phac7g01707 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Phac7g01707 374 Gene3D Tetratricopeptide repeat domain 52 250 IPR011990 GO:0005515
Phac7g01707 374 Pfam PPR repeat 264 285 IPR002885 -
Phac7g01707 374 Pfam PPR repeat family 188 236 IPR002885 -
Phac7g01707 374 Gene3D Tetratricopeptide repeat domain 251 314 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01707 Phac-Chr7 14087474 14091049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01707 4 72 AS2 family AT3G27650 45.133 2.54e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac7g01707 LOB 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01707 - - vun:114181091 303.908