Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01679 ATGGCTGGGCTTGAGCTCGTTCCCATAGGTACAATTTTGACAGTGGTAACTACACAAGTCTTGAGAACTGCTCAAGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAAGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTGCAGCTTCAAGAGTTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAGAAAGATGTTAAGAAGGCAAATAGTTTGGTGGAAAAGTATGGGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCCATTGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGGAAGTCTCTGGCTGCATTGTCCATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGATTGCAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGTCCCAGATTCAAATTGTTGACAAGTTGAACCAGGGGCTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGTTAGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTTGAACCCTCGGAGATAAGCAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTTCTGAAAGGAAAGAAAGAGCTGAATGTGTTCTTTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCAGCAAGAGATTATGAAGAAGTAGAGAGGCAGTACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAATACATCCCCCCACTCAATTCTTTCCATTGTTCTATAACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAAGCTTGGCTTTACGATGGCAACAGGAAAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTCTAAGACTATCTATCGAAGAGTGGAGAGAACTTAATTATTGTCTGATAATAAGGTCTATCAGGGAAAATTTATTATCATATTCTGACCTGCAAGAATCCCTGGCCCAAATGCAGACTCTTGTAAGAAAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGACCTTACTGATATTGTTATATCTATCCTTGGGAGCTCTGATGACAAAGAAGTGAAGAGGATGATTTTGATGACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTGGTTGAATCTGAAGGATGGGATCACATTCTTTCCTGCTTAGGGAATGACTCTAACATTTCCAAGGCAGCAATTGATCTGCTATATGAACTGCTTCAAGAACAATCTGATTGGAATCAATATCTCTGTAAAAAGCTTTCTAAAAATCACACTGCAGTTTGGTCCCTTGTTGCCCTTCTAAAGAATCCTGCCAGCCATTCTGCCGAAGTAGCGGAAAAGATTTTGAGGAAGCTTTTTGAACTAAACGAGGAAACTATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTGAAGAACCAGATTCAAGAATATCAATGACAAAAGCAATTGTTAATTTGGAGTTGAATGATTCAAACTTGAAACTCCTTGGCAACGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGAAGAACTGAATCAAAAGACTTGTCATTGTTAGCCCTGATTAAATTAGCAGGATCTCATGCTAATAAAGGAATTATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACACGGGCATTCATTATCACTAAATGCTCTGAAATCATTGAGAAGCTTTCTTCAGATGGTGATGGAATTGATTTCTTTGTTGATGGAGAGGGGAAACAACTTGAGTTAGATTCCATCATCACCAATGTGCTAGCTTTGCAGCAGAGTTCCAGCTTAGGTCCCAACATCCGAAAGCCTGCATTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATCCCGACTCAGAAATCAGAGAGACTTCCATAATTCTACTCTTTCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAGGAGAATGATAATGTGCAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTAACTATGAAGTTGATTGAGCTGGGTGGACTTGATGCAATCATAAGTATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTGAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAGCGAGATTTGGTTAAACGCGGAATATATCCTTTGCTTGTAGATTTTCTCAACACTGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCCATGAGCACTCCAAAGCTCACAGTTATTCCCAAGCCAACTGGGTGCTGGCTTTGCAGATCATCACGTGTCCCTTTGTGTCCAGCACATGGGAGTGTATGCAGTGTGAACAACACATTTTGTGTTTTGGAAGCGAAGGCTTTACCTGGCTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGAATAATACAATAAGATCCTTATTGGACATTTTGAACTGGGGAACTGAATCTCTCAAGGCAGAAGCTCTAGGACTGTTAGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCCAGATCACGTCTAATTGGTTTGACTGGCATGAATATATATGGAGATAATCACCTCAGGAGAAAGGCTGCCAAAGTGCTATCATTGCTTGAACGCTATTCAAAGTCATCATCTTCTGCGATCTCCGGAATTCTGGACTGA 3042 0.4116 MAGLELVPIGTILTVVTTQVLRTAQAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEKDVKKANSLVEKYGNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEASERKERAECVLLDQIIQLLSRADAARDYEEVERQYFERVKVIERYDSREKYIPPLNSFHCSITGAVMEDPVSLCTGTTCERHAIEAWLYDGNRKDPETKEVLEDTTLRSNIPLRLSIEEWRELNYCLIIRSIRENLLSYSDLQESLAQMQTLVRKNSINKDWISIGDLTDIVISILGSSDDKEVKRMILMTLKDAVEGNTRNKEKVVESEGWDHILSCLGNDSNISKAAIDLLYELLQEQSDWNQYLCKKLSKNHTAVWSLVALLKNPASHSAEVAEKILRKLFELNEETITIAANFGWYKPLVDRMIEEPDSRISMTKAIVNLELNDSNLKLLGNEGVIPPLLEMLSGRTESKDLSLLALIKLAGSHANKGIIAASGGVPLILDLMFSPRTRAFIITKCSEIIEKLSSDGDGIDFFVDGEGKQLELDSIITNVLALQQSSSLGPNIRKPALRALLGICKFETGLVKKAILAANGVSLILPLLDDPDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEENDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVIPKPTGCWLCRSSRVPLCPAHGSVCSVNNTFCVLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHENNTIRSLLDILNWGTESLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDNHLRRKAAKVLSLLERYSKSSSSAISGILD* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01679 1013 SUPERFAMILY RING/U-box 249 330 - -
Phac7g01679 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 333 IPR013083 -
Phac7g01679 1013 Gene3D - 855 1008 IPR011989 -
Phac7g01679 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Phac7g01679 1013 Gene3D - 521 845 IPR011989 -
Phac7g01679 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Phac7g01679 1013 Gene3D - 6 124 IPR036537 GO:0007166
Phac7g01679 1013 Coils Coil 127 154 - -
Phac7g01679 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Phac7g01679 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Phac7g01679 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Phac7g01679 1013 Coils Coil 62 89 - -
Phac7g01679 1013 CDD MLKL_NTD 16 145 - -
Phac7g01679 1013 Gene3D - 342 520 IPR011989 -
Phac7g01679 1013 SUPERFAMILY ARM repeat 348 794 IPR016024 -
Phac7g01679 1013 SUPERFAMILY ARM repeat 649 1001 IPR016024 -
Phac7g01679 1013 Coils Coil 197 217 - -
Phac7g01679 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01679 Phac-Chr7 13599660 13604404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01679 264 968 U-box Gene Family AT1G20780 27.719 1.10e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01679 - - gmx:100783638 1713.74