LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g01671	ATGGAAAACACTGTGACATATGCGACTGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAAGTGAGGGAAAAACACTGCCTGCAGCTGTAAGAATTACCAACAAAAGACCTTTGAATGAAACTTCAGAGGAGACCCTTTCCAAGGGCCCTAATGCTCCAAAAACTGTGGAAACTGAGGCCGCCCCTCCTGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCAGGAGAATGAGGGTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCCCCTTACCTTAGGAAGATTGACTTGAAGGTATATGGAGGCTACACACAACTTCTCATAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCCGACTATGCACCAACATATGAAGACAAGGACGGTGACTGGATGTTGGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGGTGTCTGA	582	0.4656	MENTVTYATDLNLKATELRLGLPGTEESEGKTLPAAVRITNKRPLNETSEETLSKGPNAPKTVETEAAPPAKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLIALETMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV*	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g01671	193	ProSiteProfiles	PB1 domain profile.	96	183	IPR000270	GO:0005515
	Phac7g01671	193	Gene3D	-	90	193	-	-
	Phac7g01671	193	FunFam	Auxin-responsive protein	91	193	-	-
	Phac7g01671	193	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	11	187	IPR003311	GO:0005634\|GO:0006355
	Phac7g01671	193	Pfam	AUX/IAA family	45	190	IPR033389	-
	Phac7g01671	193	SUPERFAMILY	CAD & PB1 domains	86	182	-	-
	Phac7g01671	193	MobiDBLite	consensus disorder prediction	40	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g01671	Phac-Chr7	13441530	13443619	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g01671	99	189	B3 DNA Binding Superfamily	AT2G46530	36.264	6.61e-10	55.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Phac7g01671		AUX_IAA	6.8e-53	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g01671	K14484		-	gmx:100527777	332.413