Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01666 ATGTTTGTTCACACGAGTGTGTCCTTCTCAGAGACGGATATAAAGACAATAGCAATGACAAAGGAACTCTTGAAGGTCAACTTAAGGAAGCTCTCAGAAGCTGTGACATGTAAGTTGTGCAATAAATGGTTGAGAAAGGCAGCCACAATAACAGAGTGCTGTCATACCTTTTGCAGGGAATGTATAGAAAAGAAGTTAATAGATGAGAAATTAAATCATTGTCCAGTATGCAATACAGACTTGGGTTGTTCTCCCCTCGATAAATTAAGGTCAGATACTCGAAAGCAAGATTTGAGGGACAAAATTTTCCCATTAGAAGATTGGAATGATAAGGAACCTTCCTCCAAACTGATAGCCAAAATAAAGAAGAATTTTGTTTCTTCATTAAAATCCAATAGAGAAATATCTAAAGCTGGTTTTAGAAAAGTTGTCATTGCAGAAGAACCAGATCTTTCTGCTCCCAAACTTGATAAAGTGGAAGATGCTAAGGAAGATGAAAACGAGGGTGATGCGGAATTTGGGGAAGAAGCTGCTACAATTGGATCCGCTAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCATTTGCTCTGCACAACCTCCAGGACAAGAAAAGACAGATGGTGATCAGCCTCGAGTTGAGACTTCCAGCGGAACTCTCAAAATCAGAATTCCGAATTTTTTAAAACCAAATACTGAGTTAAGGAATGAAAAGGTTGAATTGTTTGAGCCATTAAATTGCCTGGTGGAAGCTGGAAGAAAACGCAAGTCCCGTAGTAATTCCACCATGCAAGACAATGGTGTCACTTCAGTGCTTGTGCACTCTAATGACGATGACCCTCAGGTTGGCATGGTCGAAATCGACAACCATAGTCACAGAACTGATGGTAACCAAAACGAGTCAATTCCTTCAAGCTCAGATTCAGTAAAACGTGTTGTGAGCACCAAAGAAAAAAGACCAAAAATCTCGGAGGACTTGAATTTTCCAGCACCAGCTGAAATTGATTCGGACACTGAAAGCAGCAAAGAGTTTGGTCCAATCTGGTTCTGCTTGGTTGCTGCAGAAGAGAATAAAGGAAGTGCACCATTGCCACAACTATCTTCGTGCTACCTACGGGTCAAGGATAGCAGTGTAACTGTTTCCTATATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGCTAGCGAAACCGAGGTGGATATCACATTACAAGGGCGGCCAGTTTTATCTTCACTGCAACTGAAAACCTTAGTAGACATGTGGTTGCAAACAGTGCCAAAGAACGACATTCTGACATCTTTTGGAAGCTCAGCCAAGGATTTTATTATGGTTCTTTCGTATGGTCGAAAGGCTAACACCTCAAACTACCTTCCTTGTTCTTAG 1383 0.4093 MFVHTSVSFSETDIKTIAMTKELLKVNLRKLSEAVTCKLCNKWLRKAATITECCHTFCRECIEKKLIDEKLNHCPVCNTDLGCSPLDKLRSDTRKQDLRDKIFPLEDWNDKEPSSKLIAKIKKNFVSSLKSNREISKAGFRKVVIAEEPDLSAPKLDKVEDAKEDENEGDAEFGEEAATIGSARRAKAAARIKFICSAQPPGQEKTDGDQPRVETSSGTLKIRIPNFLKPNTELRNEKVELFEPLNCLVEAGRKRKSRSNSTMQDNGVTSVLVHSNDDDPQVGMVEIDNHSHRTDGNQNESIPSSSDSVKRVVSTKEKRPKISEDLNFPAPAEIDSDTESSKEFGPIWFCLVAAEENKGSAPLPQLSSCYLRVKDSSVTVSYIKKYLVKKLGLASETEVDITLQGRPVLSSLQLKTLVDMWLQTVPKNDILTSFGSSAKDFIMVLSYGRKANTSNYLPCS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01666 460 Pfam Zinc finger, C3HC4 type (RING finger) 37 77 - -
Phac7g01666 460 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Phac7g01666 460 MobiDBLite consensus disorder prediction 289 339 - -
Phac7g01666 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 128 IPR013083 -
Phac7g01666 460 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 22 452 IPR044807 GO:0004842
Phac7g01666 460 MobiDBLite consensus disorder prediction 155 178 - -
Phac7g01666 460 MobiDBLite consensus disorder prediction 296 310 - -
Phac7g01666 460 SUPERFAMILY RING/U-box 30 86 - -
Phac7g01666 460 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Phac7g01666 460 SMART ring_2 37 77 IPR001841 -
Phac7g01666 460 MobiDBLite consensus disorder prediction 197 216 - -
Phac7g01666 460 Gene3D - 327 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01666 Phac-Chr7 13250557 13254212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01666 23 374 C3H Transcription Factor Family AT2G30580 30.469 1.06e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01666 K16277 - gmx:102669950 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g01666 7 13250557 13254212 Phac7g01666 7 13250557 13254212 ECH