Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01643 ATGGCCATCGCGGAGGAGGAGCAAGTAATTGCACTGAAGCAACAGCTGCGCGAGTCGGTCGAGAGTATCGTGGACAGGGACGATTTCACCGTTGACGCTGCGAACAAGGCTATCCATGCTCTTTCTGCCCTCAAGGACTTGAAGTCCACCACCTTTCTCTCAACCAACATGGAACCCACACCCGTTCCTTTTCACTTTCGATGCCCTCTCTCTAATCACTTGATGACAGATCCTGTTATCTTGACCACTGGAAAGACTTTTGATCGTCAGTTCATCCTGAAGTGGCTGGATGAGGTCAACAGAGTTTGCCCTCAGGCCCGAAAAGTCCTCTCTCTCTGTATTCTCACTCCAAATTTCTTTCTCCAAGGCATGATCTCAGAGTGGTGCACAGAGAACGGAGTTGACCTACCAATGCCCATTTTTGACATTCACGACGAACAACTGACCGAGGCACTCAAACACCGTTTGTGTTCACTGCTCTTCAAACTGTCACTGTCACTTTCTGAACAGAAAGAAGCTGCAAGAGAGCTTCGTCAGTTAGCAAAACGAATGGCCTCAATTCGAACACTCTTTGGAAACTCACAAATGATTAATCTTCTGATGCGTCCGGTATCACCCGGCACAGCTTCTATGGACCCTGATCACCACGACGATTTGATCGCAATTCTTCTAAATATCTCAATAAACGATACAAACAAGAGGTTGTTAGCAGAAAACGAAAAAGTCATCAGCTTTCTGATTGATTCATTGAAATCCGGAACAGTTCAGACAAGAAGCAATGCAGCTGCAGCTTTTTCCTCAATGTCATCTATTGATTCAAACAAGCACATAATTGGAAAATCAGGCGCTATAAAATACTTGGTGGATTTACTGGAAGAGGGAGACCCATTAGCCATGAAAGATGCTGGGTCAGCCTTGTTCAAACTATGCTTTGCGCGTGAAAATATAGCGCAGACCGTGCGAGAAGGGGCAGTGCAGATTATTCTTGGGAAGATCGTTGACCATGTTCTTGTTGATGAGTTGTTCTCACTGTTGGCACTTCTGGCTACACATTCTAAGGCGGTTGAAGAGTTGGTGAATCATGGTGGTGTCCGTTTCTTGCTTGATGTTTTGAGGGAGAACACAGAAGAACGCATAAAGGAAAACTCTGTTGTAATTCTACATCTAATCTGTTACCATAACAGAGAAAAAAGGGCGGAAATTAGAGAGGAAGAAATGGCGAACGGCACACTCTCTAGGCTTGTTCAAAACGGGTCCTCAAGGACGAAAAGGAAAGCTAGCTCCGTCCTTCACTGTCTTGGCATAGATCAATCCACTTCGCACAACAATCCACTTCCCTCAGTTACAATAAACTCTACTTCGTCATCAAATACAGATTAG 1380 0.4507 MAIAEEEQVIALKQQLRESVESIVDRDDFTVDAANKAIHALSALKDLKSTTFLSTNMEPTPVPFHFRCPLSNHLMTDPVILTTGKTFDRQFILKWLDEVNRVCPQARKVLSLCILTPNFFLQGMISEWCTENGVDLPMPIFDIHDEQLTEALKHRLCSLLFKLSLSLSEQKEAARELRQLAKRMASIRTLFGNSQMINLLMRPVSPGTASMDPDHHDDLIAILLNISINDTNKRLLAENEKVISFLIDSLKSGTVQTRSNAAAAFSSMSSIDSNKHIIGKSGAIKYLVDLLEEGDPLAMKDAGSALFKLCFARENIAQTVREGAVQIILGKIVDHVLVDELFSLLALLATHSKAVEELVNHGGVRFLLDVLRENTEERIKENSVVILHLICYHNREKRAEIREEEMANGTLSRLVQNGSSRTKRKASSVLHCLGIDQSTSHNNPLPSVTINSTSSSNTD* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01643 459 PANTHER U BOX DOMAIN-CONTAINING 9 433 - -
Phac7g01643 459 SUPERFAMILY ARM repeat 166 436 IPR016024 -
Phac7g01643 459 CDD RING-Ubox_PUB 63 111 IPR045210 -
Phac7g01643 459 Gene3D - 145 444 IPR011989 -
Phac7g01643 459 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Phac7g01643 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 135 IPR013083 -
Phac7g01643 459 SMART arm_5 351 392 IPR000225 GO:0005515
Phac7g01643 459 SMART arm_5 144 182 IPR000225 GO:0005515
Phac7g01643 459 SMART arm_5 271 311 IPR000225 GO:0005515
Phac7g01643 459 SMART arm_5 229 270 IPR000225 GO:0005515
Phac7g01643 459 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Phac7g01643 459 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Phac7g01643 459 SUPERFAMILY RING/U-box 56 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01643 Phac-Chr7 12928105 12929976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01643 124 430 U-box Gene Family AT3G07360 48.726 1.58e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01643 - - gmx:100806132 546.969