Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01603 ATGTGCTCGAATTCACTTGAATGCTGCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTCAGCATGGTGCACATTTTTTGAGTTTTCAAATGGAGCGGGGTTGCCATGGTCTCGAACGCGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCTTATTGTGGACACTCTTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACATGTCCGGTGTGTCGGATATCGTTGCGTGAATTTCCAGATAGAAAATGGTTAATGCAACCCTTGTTCAGCTCTGCCTTACAACCTGGCATAGAATCCTTTGATACGCTTCATTATCACTGTATGATGGATGATAATGGATTACCAGCAAGAACCCCTGACAACCATGGGGTGAATCCTATAGAAGAAGATAATTTTCCAGCTGAGGGTGGTGGAGCAGTTTCTATGGACAATATCACATGTATAAGTGAGGGTGACTTCATTAAAGATGAGGCGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 618 0.4385 MCSNSLECCKEILSYCLQIQSQHGAHFLSFQMERGCHGLERVTVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDTLHYHCMMDDNGLPARTPDNHGVNPIEEDNFPAEGGGAVSMDNITCISEGDFIKDEAKKHVESPSNFQN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01603 205 Pfam Ring finger domain 64 107 IPR001841 -
Phac7g01603 205 CDD RING-H2_EL5-like 64 107 - -
Phac7g01603 205 SUPERFAMILY RING/U-box 59 113 - -
Phac7g01603 205 PANTHER OS11G0150450 PROTEIN 27 163 - -
Phac7g01603 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 112 IPR013083 -
Phac7g01603 205 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
Phac7g01603 205 SMART ring_2 65 106 IPR001841 -
Phac7g01603 205 FunFam E3 ubiquitin-protein ligase ATL6 28 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01603 Phac-Chr7 12256796 12260170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01603 38 114 C3H Transcription Factor Family AT4G10150 45.455 7.07e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01603 - - gmx:100794979 338.576