Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01585 ATGGAACTTCTCTCTGTGTCTGTCACACTCTGCAAATGCCAAACATTTTCCTTTCAGAAACCAAAGACAACCCAAATTCATGAACTTCCAGTAAACTTAAGATTACCCAGCAAAATAAACCATTCCAATCTTTCTTCTTATTCGTGTAATTGGTCTATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTACCACCACACAGAACCGCCATTGGATGGTGGTCATGGACACACCTCCTCAAGGGCTCAATTCAAAGCCACAAGTCATTGATTATTATGCCAACGTACTACAAACAGTTATCGGCAGTGAGAAAGATGCTCAGATGTGTATATATGATGCTTCATGGGACACCCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGGGACCAGGCAGTTCACCCGTCAGGATTACAAACTATTACCAATATGTTGTTCCCTGCTGGAAATCCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAAGCTCAAATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTCTCCTGGAAGACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGATTGTGCTCAAGAGCTAGCTGGTGTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTAACTTAGAAAATAGTTGGAATGTTTCCAACTCTTCTGAAGCAAGTCATGAAGAGCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTGGTTGAAGTTAAAGTTATTATGGACAAGATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCAAGTGCAGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGGATCATCAAGTTGA 1170 0.4154 MELLSVSVTLCKCQTFSFQKPKTTQIHELPVNLRLPSKINHSNLSSYSCNWSITRVAATTYPSFNSTTTQNRHWMVVMDTPPQGLNSKPQVIDYYANVLQTVIGSEKDAQMCIYDASWDTHFGFCCDIDEEISSQLASLPGVLLVRPDPDFNSLKKDYSLSRDQAVHPSGLQTITNMLFPAGNPKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNNFESENKDYAGSNLENSWNVSNSSEASHEEPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAGSSS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01585 389 Gene3D - 266 389 IPR012677 -
Phac7g01585 389 FunFam Organelle RRM domain-containing protein 1, chloroplastic 265 389 - -
Phac7g01585 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 265 IPR037045 -
Phac7g01585 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 152 IPR037045 -
Phac7g01585 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Phac7g01585 389 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 177 366 IPR039206 GO:0016554
Phac7g01585 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 365 IPR000504 GO:0003723
Phac7g01585 389 SMART rrm1_1 298 371 IPR000504 GO:0003723
Phac7g01585 389 SUPERFAMILY RNA-binding domain, RBD 285 386 IPR035979 GO:0003676
Phac7g01585 389 FunFam Organelle RRM domain-containing protein 1, chloroplastic 175 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01585 Phac-Chr7 12051839 12055362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01585 289 384 C2H2 Transcription Factor Family AT2G19380 32.292 2.66e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01585 - - vun:114191397 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g01585 7 12051839 12055362 Phac7g01585 7 12051839 12055362 ECH