Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01573 ATGCACAAACCATACTCTTTCTCCTGCATATCATCTGATAGTGCCTGCTTAGAAGGTGACCAGGTTGGCAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTTGCCACCACAAATCCAAACTCTCTAACCCAAAACACTCTTCTGCTATGAATCAGAAAAACCCTAGCTCTGATGATCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGTTAGCAAACCTTCTTCCACTCCGATTCATGGTCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGTAACAAAACCTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGACGGAGTCACTGAGAGGGTCAAAAGCAGGTTCTTCGATGCTGAGGATTCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAAAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTAGTAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTCAAAGACCATGTCCGTGCCTTCGGTAATGGGCATGCTCCACACAGCTTGGGTGGAGAAAGAGGGAGTGAAGATGAGAGGGAAATGGTTGATTTTAGTTTGAAATAA 789 0.4715 MHKPYSFSCISSDSACLEGDQVGNEDSISLSLGPPCHHKSKLSNPKHSSAMNQKNPSSDDLSGVTVALHIGLPTTVSKPSSTPIHGRYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGTESLRGSKAGSSMLRIPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCSKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGGERGSEDEREMVDFSLK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01573 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Phac7g01573 262 SUPERFAMILY beta-beta-alpha zinc fingers 173 208 IPR036236 -
Phac7g01573 262 MobiDBLite consensus disorder prediction 28 60 - -
Phac7g01573 262 SUPERFAMILY beta-beta-alpha zinc fingers 84 126 IPR036236 -
Phac7g01573 262 MobiDBLite consensus disorder prediction 45 60 - -
Phac7g01573 262 MobiDBLite consensus disorder prediction 239 262 - -
Phac7g01573 262 Gene3D Classic Zinc Finger 102 125 - -
Phac7g01573 262 Gene3D Classic Zinc Finger 129 212 - -
Phac7g01573 262 FunFam Zinc finger protein WIP2 157 239 - -
Phac7g01573 262 Pfam Zinc finger, C2H2 type 103 122 IPR013087 -
Phac7g01573 262 MobiDBLite consensus disorder prediction 245 262 - -
Phac7g01573 262 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Phac7g01573 262 PANTHER ZINC FINGER PROTEIN WIP2 24 246 IPR043584 GO:0003700|GO:0010468
Phac7g01573 262 SMART c2h2final6 151 183 IPR013087 -
Phac7g01573 262 SMART c2h2final6 103 125 IPR013087 -
Phac7g01573 262 SMART c2h2final6 188 208 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01573 Phac-Chr7 11939338 11940787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01573 23 244 C2H2 Transcription Factor Family AT1G13290 66.946 7.84e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g01573 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01573 - - gmx:100784037 458.373