Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01526 ATGGGGGTAAAAGATCCAGACGCGGAGGTGATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTTCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGAATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCAAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCATTAGCACATGAGAGTGCAAGATACCCCAGTAGCTCAAACCCTTTGGGAACTCATTTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAATCAGAACCAAACAGTCACTAACATTGGTGCAGCTCTAAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGAATAACAACACCAATCAAACATTATTTGAAGAACACCAATCACAACAAGGACAAATATTCTCAAACAAACAACTACATGGCCTAATGCAGCTCACTGCTCTTGATGGCAACACTAACAACTCCAATTCTTCATCAGTTGCTGCTCCTAATTCCAATCTCTTCAACCTCAGCTTCTTCCCAAGTAGCAATAGCACTAGCACCATTATCCCTGATCAATTCAACAACATAAGTGGTAGTGACCAAGGAACAACACCACCACCACTCTTTGTTAATAACAACCCTGCAGTAAGTGATCATGTGGGTTCAAGTTTTTCTTCGCTCTTTGGTGATTCAATAGAAAACGTATCATCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCCTCTCAAATGGGTTCAACCACAACCACCAGCGGTTCTTCTTTACTTAGAGGAATGTCTAGCAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCCAATGGAAACACGTCCTTGTTTAGGAATATGCAAGGGAATGAAAACAACCTTTCTGGGTTTCACAACGTCGACGAGTCCAACCATAAGTTGCCCCAGAATCTTAATGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTTAGAAATATGAATGGTGGATTCTCACAGAGAGAACAACTACAACAACAACGTGTCATGGGTACTGAATTCTTTGGACCCTGA 1455 0.4282 MGVKDPDAEVIKLSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARYPSSSNPLGTHLFGTNHTSLTLSQVGTQLSQVQNQNQTVTNIGAALKFEHLIPPLNQSSFGHSPQSMPSSAFFMNNNTNQTLFEEHQSQQGQIFSNKQLHGLMQLTALDGNTNNSNSSSVAAPNSNLFNLSFFPSSNSTSTIIPDQFNNISGSDQGTTPPPLFVNNNPAVSDHVGSSFSSLFGDSIENVSSPHMSATVLLQKASQMGSTTTTSGSSLLRGMSSNGSKAENGHHHHHNLQGLMNSIANGNTSLFRNMQGNENNLSGFHNVDESNHKLPQNLNVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQRVMGTEFFGP* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01526 484 SMART c2h2final6 100 120 IPR013087 -
Phac7g01526 484 SMART c2h2final6 65 95 IPR013087 -
Phac7g01526 484 SMART c2h2final6 24 46 IPR013087 -
Phac7g01526 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 46 IPR013087 -
Phac7g01526 484 MobiDBLite consensus disorder prediction 363 384 - -
Phac7g01526 484 Gene3D Classic Zinc Finger 3 74 - -
Phac7g01526 484 Pfam Zinc-finger double-stranded RNA-binding 24 46 IPR022755 -
Phac7g01526 484 FunFam protein indeterminate-domain 12-like 3 71 - -
Phac7g01526 484 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Phac7g01526 484 MobiDBLite consensus disorder prediction 363 392 - -
Phac7g01526 484 Gene3D Classic Zinc Finger 78 156 - -
Phac7g01526 484 FunFam protein indeterminate-domain 5, chloroplastic-like 78 157 - -
Phac7g01526 484 SUPERFAMILY beta-beta-alpha zinc fingers 23 120 IPR036236 -
Phac7g01526 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 469 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01526 Phac-Chr7 11024457 11027626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01526 19 462 C2H2 Transcription Factor Family AT2G02080 47.390 3.60e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g01526 zf-C2H2_jaz 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01526 K25870 - gmx:100780268 704.131