Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01501 ATGATTTACTTGTCTCAGGCATTGCGGATGAATGAAACAGCAGATAAATTCCAAAAAGTAACTGAAAAAATTGAAGCTGTGCTGAGTGAAATTCTTTACTACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTACATGCTCAATTCAAAAGAGCTAAAGCTCAAACAGAATTTGCTGATATACAACTAGACATGGATATGGCAATGGCACAAAAAGAAAAAGACCCTGATCCTGCTCTACTCAAAAGACTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAATCTAGTGAATTACATGAATTGTTGATCACAAGTGGTGGAGAACTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGACTTTGTGCTCAAAGAAAATCCCAAAGTCGACACTAGTGAATGTGATAAATTAACAGTTAAGCACCGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTTATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAGTGGCTTGATGCTGGTCACAAAACCTGTCCCAAGACACAGCAGACTCTTGTCCATACAGCCCTTACCCCTAACTATGTTCTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGTATTGAGCTACCAAAAAAGCAAGGGAGTTGTAGAACAAAGAAATGTTGTGGAAGCAGTAATTCAGATTGCGATCGAACTGCTATTAGTGCCTTACTTGATAAACTGGCGAGTAACAATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGATAATCGAGTATGCATTGCTGAGGCCGGAGCAATTCCGCCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACTCAAGAGCACGCTGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAACGCTGGAGCCATACCAGATATTGTAGATGTACTAAAAAGTGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTCTTTAGTTTATCAGTTCTAGACGAGAACAGGGTGCAAATAGGTGCAGCTGGAGCTATCCCGGCCCTTATAAAGTTACTCTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATCTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGGACCATTGATACAATTTCTGAAGGATGCTGGTGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGCAGGGTAGCGATTGGTCATGCCGGGCCAATCCCTATTCTAGTTGAGGTTATACGAACCGGCTCTCCACGCAACCGAGAGAATGCGGCCACTGTCTTGTGGTCTCTATGCACTGGAGATCCTCTGCTATTAAAACTAGCTAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCGAAGAGAAAAGCTGGAAGCATACTAGAACTCTTGCAGCGAATGAAAGGGGATGATAATCTGCGGAATTCATAA 1635 0.4251 MIYLSQALRMNETADKFQKVTEKIEAVLSEILYYKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDMDMAMAQKEKDPDPALLKRLSEKLHLRTINDLRKESSELHELLITSGGELGDSFEMITSLLSKLRDFVLKENPKVDTSECDKLTVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCCGSSNSDCDRTAISALLDKLASNNIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENRVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGHAGPIPILVEVIRTGSPRNRENAATVLWSLCTGDPLLLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMKGDDNLRNS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01501 544 FunFam RING-type E3 ubiquitin transferase 371 543 - -
Phac7g01501 544 PANTHER U BOX DOMAIN-CONTAINING 11 532 - -
Phac7g01501 544 SMART arm_5 411 451 IPR000225 GO:0005515
Phac7g01501 544 SMART arm_5 288 328 IPR000225 GO:0005515
Phac7g01501 544 SMART arm_5 329 369 IPR000225 GO:0005515
Phac7g01501 544 SMART arm_5 452 492 IPR000225 GO:0005515
Phac7g01501 544 SMART arm_5 370 410 IPR000225 GO:0005515
Phac7g01501 544 SMART Ubox_2 163 226 IPR003613 GO:0004842|GO:0016567
Phac7g01501 544 Pfam Armadillo/beta-catenin-like repeat 288 327 IPR000225 GO:0005515
Phac7g01501 544 Pfam Armadillo/beta-catenin-like repeat 371 409 IPR000225 GO:0005515
Phac7g01501 544 SUPERFAMILY RING/U-box 160 235 - -
Phac7g01501 544 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Phac7g01501 544 FunFam RING-type E3 ubiquitin transferase 238 337 - -
Phac7g01501 544 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 341 IPR000225 GO:0005515
Phac7g01501 544 CDD RING-Ubox_PUB 161 213 IPR045210 -
Phac7g01501 544 ProSiteProfiles U-box domain profile. 159 233 IPR003613 GO:0004842|GO:0016567
Phac7g01501 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 233 IPR013083 -
Phac7g01501 544 Pfam U-box domain 160 230 IPR003613 GO:0004842|GO:0016567
Phac7g01501 544 SUPERFAMILY ARM repeat 255 532 IPR016024 -
Phac7g01501 544 FunFam RING-type E3 ubiquitin transferase 160 233 - -
Phac7g01501 544 Gene3D - 436 543 IPR011989 -
Phac7g01501 544 Gene3D - 245 435 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01501 Phac-Chr7 10741815 10745913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01501 4 537 U-box Gene Family AT3G54850 69.476 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01501 - - gmx:100777452 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g01501 7 10741815 10745913 Phac7g01501 7 10741815 10745913 ECH