Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01499 ATGGGTGGGAGCGAGAGCTCGAAGGGCGTGGTTTTGGGTCGTTTGGTTGAGTGCATCAAGGATATTTCTGGGTTGCTGGAGTGTCAGAACTTCTGGAGGAGGGTATATGGGAATTTGATTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTTGAGGAGTTGAAAGATAGTGATGAGTCCCTCAGCGATGAACAACTTGAGAGCTTTGAGTCTCTCTTGGTTGCTTTAGATTCAGCTAAGACCCTTTTAAAGGCTGTCAACCAAGGGAGCAAGCTTTATCAGGCATTGCGGATGAATGAAACAGCAGATAAATTCCAAAAAGTAACTGAAAAAATTGAAGCTGTGCTGAGTGAAATTCTTTACTACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTACATGCTCAATTCAAAAGAGCTAAAGCTCAAACAGAATTTGCTGATATACAACTAGACATGGATATGGCAATGGCACAAAAAGAAAAAGACCCTGATCCTGCTCTACTCAAAAGACTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAATCTAGTGAATTACATGAATTGTTGATCACAAGTGGTGGAGAACTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGACTTTGTGCTCAAAGAAAATCCCAAAGTCGACACTAGTGAATGTGATAAATTAACAGTTAAGCACCGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTTATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAGTGGCTTGATGCTGGTCACAAAACCTGTCCCAAGACACAGCAGACTCTTGTCCATACAGCCCTTACCCCTAACTATGTTCTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGTATTGAGCTACCAAAAAAGCAAGGGAGTTGTAGAACAAAGAAATGTTGTGGAAGCAGTAATTCAGATTGCGATCGAACTGCTATTAGTGCCTTACTTGATAAACTGGCGAGTAACAATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGATAATCGAGTATGCATTGCTGAGGCCGGAGCAATTCCGCCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACTCAAGAGCACGCTGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAACGCTGGAGCCATACCAGATATTGTAGATGTACTAAAAAGTGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACCCTCTTTAGTTTATCAGTTCTAGACGAGAACAGGGTGCAAATAGGTGCAGCTGGAGCTATCCCGGCCCTTATAAAGTTACTCTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATCTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGGACCATTGATACAATTTCTGAAGGATGCTGGTGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGCAGGGTAGCGATTGGTCATGCCGGGCCAATCCCTATTCTAGTTGAGGTTATACGAACCGGCTCTCCACGCAACCGAGAGAATGCGGCCACTGTCTTGTGGTCTCTATGCACTGGAGATCCTCTGCTATTAAAACTAGCTAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCGAAGAGAAAAGCTGGAAGCATACTAGAACTCTTGCAGCGAATGAAAGGGGATGATAATCTGCGGAATTCATAA 1896 0.433 MGGSESSKGVVLGRLVECIKDISGLLECQNFWRRVYGNLIRRVKLLSPLFEELKDSDESLSDEQLESFESLLVALDSAKTLLKAVNQGSKLYQALRMNETADKFQKVTEKIEAVLSEILYYKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDMDMAMAQKEKDPDPALLKRLSEKLHLRTINDLRKESSELHELLITSGGELGDSFEMITSLLSKLRDFVLKENPKVDTSECDKLTVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCCGSSNSDCDRTAISALLDKLASNNIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENRVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGHAGPIPILVEVIRTGSPRNRENAATVLWSLCTGDPLLLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMKGDDNLRNS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01499 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Phac7g01499 631 Gene3D - 426 522 IPR011989 -
Phac7g01499 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Phac7g01499 631 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Phac7g01499 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Phac7g01499 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Phac7g01499 631 SUPERFAMILY ARM repeat 342 619 IPR016024 -
Phac7g01499 631 Gene3D - 332 425 IPR011989 -
Phac7g01499 631 SMART arm_5 498 538 IPR000225 GO:0005515
Phac7g01499 631 SMART arm_5 539 579 IPR000225 GO:0005515
Phac7g01499 631 SMART arm_5 457 497 IPR000225 GO:0005515
Phac7g01499 631 SMART arm_5 375 415 IPR000225 GO:0005515
Phac7g01499 631 SMART arm_5 416 456 IPR000225 GO:0005515
Phac7g01499 631 CDD RING-Ubox_PUB 248 300 IPR045210 -
Phac7g01499 631 Gene3D - 11 121 IPR036537 GO:0007166
Phac7g01499 631 SUPERFAMILY RING/U-box 247 322 - -
Phac7g01499 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Phac7g01499 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Phac7g01499 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Phac7g01499 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Phac7g01499 631 FunFam RING-type E3 ubiquitin transferase 325 424 - -
Phac7g01499 631 PANTHER U BOX DOMAIN-CONTAINING 35 619 - -
Phac7g01499 631 FunFam RING-type E3 ubiquitin transferase 459 630 - -
Phac7g01499 631 Gene3D - 523 630 IPR011989 -
Phac7g01499 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01499 Phac-Chr7 10741815 10745913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01499 11 624 U-box Gene Family AT3G54850 66.124 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01499 - - gmx:100777452 1100.12