Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01391 ATGGATCTAGAAGGAGGCTTATGTGCTAATAACTGCACAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGATTGCAAACAAATTTGTCCTCAGATCCCCCTTCTTTCTATGGTCTCGAAATTGAATCACCTTTTAATACATTCAACCCACCCTCTCCTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCTTCTAAGTGACTCATCAAATACCACTAAGCTCCAAGATTGGAATCCAAGTGCAATGTTGAACAATCTTTGCTTCCTTGAAGAAAAGATTCATCAGCTTCGGGATTTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCATGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGCAATCTTCTCCCCTCTGTTAGGCACACCCTCACAAATACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCGGAACCAAGTAGTGGTATTAGGCCACAAAATAATGGTGGAAATAAACTGTTTGGTAAGTCCTCTCCAAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCTGGTTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAACTGGATCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCTACCACTAAAGACTATTTTGTGTGTCAAAAACCACTATAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGCAGATGTAACATGAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACGTTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACATCAAAGGAGTGGCCGAGCCACCTGATCCCCAGAACAGAGAATGCAGCAATAAGGTAGGAAGTGTTAACTTCTGTTTTGGATCAAAGCTTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAATGAATTCCCTCAAACTCCCTTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTCCAAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTAG 1539 0.4146 MDLEGGLCANNCTRSSSLTSPGNGLQTNLSSDPPSFYGLEIESPFNTFNPPSPPIQSVLPGQSNTDVEIPDQENCLLSDSSNTTKLQDWNPSAMLNNLCFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGNLLPSVRHTLTNTNPLVGQIDQLHGINLPFGSEPSSGIRPQNNGGNKLFGKSSPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFLPLKTILCVKNHYKRTHCDKSYTCSRCNMKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHVALFQGHTPAIPLDDIKGVAEPPDPQNRECSNKVGSVNFCFGSKLSSENVVQNMMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01391 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 81 483 IPR044300 GO:0010044|GO:0010447
Phac7g01391 512 MobiDBLite consensus disorder prediction 184 214 - -
Phac7g01391 512 Gene3D Classic Zinc Finger 244 314 - -
Phac7g01391 512 MobiDBLite consensus disorder prediction 187 214 - -
Phac7g01391 512 SMART c2h2final6 309 342 IPR013087 -
Phac7g01391 512 SMART c2h2final6 347 369 IPR013087 -
Phac7g01391 512 SMART c2h2final6 260 282 IPR013087 -
Phac7g01391 512 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Phac7g01391 512 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Phac7g01391 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01391 Phac-Chr7 9376741 9379974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01391 228 510 C2H2 Transcription Factor Family AT1G34370 68.166 8.38e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g01391 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01391 - - gmx:100170687 941.799