Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01365 ATGGGTACGTTGAATCTACTCTTCTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCGAAGGTGGTGCTTATTGGGAACAATATAACTCTGTCCTTCGATGATATTGAAGCAAATTTTGCTCCAACAGTCAAAGGTTCTGGACAATATGGGGTCTTATATTTGGCGGAGCCACTTGATGCGTGTACAGAACTGACAAATAAAGTTGAACGACTTCTCAATGTGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTCAGAAGGGCACAAAAGGCTGGCTTCGAAGCTGTAATTGTCTATGACAATGAAGAAGACGGTGTCTTGGTTGCGATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTACTTGCAATGTCTGCTGTGCTGGCCACTTGTTTCTTTGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGGTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTATTGGCGAGAAGATCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTATCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGAACCACCACCTTCAGAATCCACACCCTTGCTCTCGTCAAGCTCAGCATCCTCTGTCTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCGCAGACCACATCTATTTCTCGTAACCACTCCATTGCCAGCACACCTCATTTTCATCCATCACTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCGTGAGCCGAAGCTCAGTTGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCGCATTCCATGGGGTATCCCTCTTTGCCATCCCTTAACTCAAGGTACATGTCTCCATATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCAGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1323 0.4414 MGTLNLLFFFSLVSLCAMAAAKVVLIGNNITLSFDDIEANFAPTVKGSGQYGVLYLAEPLDACTELTNKVERLLNVSSPFALVVRGGCSFEEKVRRAQKAGFEAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCIGEKIRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLTEPPPSESTPLLSSSSASSVLSSVRSSLASSSAIQIARTASQTTSISRNHSIASTPHFHPSLRSSYHQSPSLSVSRSSVDLRNASQRSLASHLNSPHSMGYPSLPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01365 440 Gene3D - 17 154 - -
Phac7g01365 440 SUPERFAMILY RING/U-box 223 286 - -
Phac7g01365 440 MobiDBLite consensus disorder prediction 341 383 - -
Phac7g01365 440 Pfam Ring finger domain 232 275 IPR001841 -
Phac7g01365 440 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Phac7g01365 440 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 290 - -
Phac7g01365 440 SMART ring_2 233 274 IPR001841 -
Phac7g01365 440 Pfam PA domain 61 141 IPR003137 -
Phac7g01365 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
Phac7g01365 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 280 IPR013083 -
Phac7g01365 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 280 - -
Phac7g01365 440 SUPERFAMILY PA domain 75 161 IPR046450 -
Phac7g01365 440 CDD PA_C_RZF_like 12 162 IPR044744 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01365 Phac-Chr7 9138837 9144681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01365 20 439 C3H Transcription Factor Family AT1G22670 48.357 2.32e-119 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01365 K15692 - gmx:100791248 715.301