Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01306 ATGGCAGCAGCGGTTGTTTCTTCACCGATGACTCAGTCTGTGACTGCAACAGCGGCTCCGTCAACAGCATTGGGCGGAGGACCATTTTCGAATGCTTCGCTGTACGTGGGTGATCTCGATGGCAATGTGAATGAGGAGCAACTTTATGATCTTTTCAGTCAGGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAGCGATCCTCTCTCGGTTACGCTTATGTCAATTTTTCGACCGCTCAGGATGCATCCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCGATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACATGGCAATGTGTTCATCAAAAACCTGGATACCTCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATAACGTTACTGGCCAGTCAAAAGGGTATGGATTTGTTCAGTTTGACAACGAAGATGCTGCTCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTATGTTGGACTCTTTATTCGGCGTCAGGTTCGGACAAATGGATCACCCAAATTTACTAATGTCTATGTGAAAAATTTTTCTGAAACATTCACTGATGACGACCTTACTAAGTTATTTGGATCATATGGTACAATAACTAGTGCCACTCTCATGAAAGATATGAATGGGAAGTCTAGAGGCTTTGGTTTTGTAAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAAGTGCTAAATGGCTCTACCATTGATGACAAGGTTTTATACGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCCGAGTTGAAAGCTAAAATTGAGCAAGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAGAAATTGAGAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTGGATTCAAATGGACATAGCAAGGGGTCTGGTTTTGTTGCTTTTTCTACTCCGGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTTTATGTTGCTGTGGCACAACGTAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTGTATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCACCCCTGGCTTCATACCACCACAGCCTGCTGGATATTCATTCCAACAGCAAATTTTGCCTGGTATGCGGCCTGGATTTGCCCCCAATTTCATTACTCCTTACCACCTTCAAAGGCAGGGTCAGTCTGGACATAGGACAGGAGTTCGACGAAATGGAAACTTTCAACCGGTGCAACAGAACCAGCACCTAATGATGGTCAGCGTTCTGGAGCAGTGTCTACTACACTTGCATCCGCTCTTGCATCTGCCACTCCAGAAAATCAACGCATGA 1584 0.4306 MAAAVVSSPMTQSVTATAAPSTALGGGPFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSTAQDASNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDNVTGQSKGYGFVQFDNEDAAQNAIKQLNGMLINDKQVYVGLFIRRQVRTNGSPKFTNVYVKNFSETFTDDDLTKLFGSYGTITSATLMKDMNGKSRGFGFVNFQSPDSAAAAVEVLNGSTIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLRDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHPGAPRLAPQQLYFGQGTPGFIPPQPAGYSFQQQILPGMRPGFAPNFITPYHLQRQGQSGHRTGVRRNGNFQPVQQNQHLMMVSVLEQCLLHLHPLLHLPLQKINA* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01306 527 FunFam Polyadenylate-binding protein 296 401 - -
Phac7g01306 527 Gene3D - 310 409 IPR012677 -
Phac7g01306 527 SUPERFAMILY RNA-binding domain, RBD 31 201 IPR035979 GO:0003676
Phac7g01306 527 CDD RRM4_I_PABPs 312 390 - -
Phac7g01306 527 Gene3D - 205 309 IPR012677 -
Phac7g01306 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Phac7g01306 527 SMART rrm2_1 33 106 IPR003954 GO:0003676
Phac7g01306 527 SMART rrm2_1 211 283 IPR003954 GO:0003676
Phac7g01306 527 SMART rrm2_1 314 386 IPR003954 GO:0003676
Phac7g01306 527 SMART rrm2_1 121 194 IPR003954 GO:0003676
Phac7g01306 527 PANTHER RNA BINDING PROTEIN 31 94 - -
Phac7g01306 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Phac7g01306 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Phac7g01306 527 FunFam Polyadenylate-binding protein 121 195 - -
Phac7g01306 527 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 501 IPR006515 GO:0003723
Phac7g01306 527 SUPERFAMILY RNA-binding domain, RBD 209 394 IPR035979 GO:0003676
Phac7g01306 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Phac7g01306 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Phac7g01306 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Phac7g01306 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Phac7g01306 527 CDD RRM2_I_PABPs 118 194 IPR045305 -
Phac7g01306 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Phac7g01306 527 FunFam Polyadenylate-binding protein 25 120 - -
Phac7g01306 527 Coils Coil 282 310 - -
Phac7g01306 527 Gene3D - 119 204 IPR012677 -
Phac7g01306 527 Gene3D - 27 118 IPR012677 -
Phac7g01306 527 FunFam Polyadenylate-binding protein 199 295 - -
Phac7g01306 527 CDD RRM3_I_PABPs 209 288 - -
Phac7g01306 527 SMART rrm1_1 211 283 IPR000504 GO:0003723
Phac7g01306 527 SMART rrm1_1 121 194 IPR000504 GO:0003723
Phac7g01306 527 SMART rrm1_1 33 106 IPR000504 GO:0003723
Phac7g01306 527 SMART rrm1_1 314 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01306 Phac-Chr7 8665232 8669490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01306 31 491 Eukaryotic Initiation Factors Gene Family AT1G71770 61.489 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01306 K13126 - gmx:100783163 866.3