Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01304 ATGGCAGCAGCGGTTGTTTCTTCACCGATGACTCAGTCTGTGACTGCAACAGCGGCTCCGTCAACAGCATTGGGCGGAGGACCATTTTCGAATGCTTCGCTGTACGTGGGTGATCTCGATGGCAATGTGAATGAGGAGCAACTTTATGATCTTTTCAGTCAGGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAGCGATCCTCTCTCGGTTACGCTTATGTCAATTTTTCGACCGCTCAGGATGCATCCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCGATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACATGGCAATGTGTTCATCAAAAACCTGGATACCTCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATAACGTTACTGGCCAGTCAAAAGGGTATGGATTTGTTCAGTTTGACAACGAAGATGCTGCTCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTATGTTGGACTCTTTATTCGGCGTCAGGTTCGGACAAATGGATCACCCAAATTTACTAATGTCTATGTGAAAAATTTTTCTGAAACATTCACTGATGACGACCTTACTAAGTTATTTGGATCATATGGTACAATAACTAGTGCCACTCTCATGAAAGATATGAATGGGAAGTCTAGAGGCTTTGGTTTTGTAAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAAGTGCTAAATGGCTCTACCATTGATGACAAGGTTTTATACGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCCGAGTTGAAAGCTAAAATTGAGCAAGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAGAAATTGAGAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTGGATTCAAATGGACATAGCAAGGGGTCTGGTTTTGTTGCTTTTTCTACTCCGGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTTTATGTTGCTGTGGCACAACGTAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTGTATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCACCCCTGGCTTCATACCACCACAGCCTGCTGGATATTCATTCCAACAGCAAATTTTGCCTGGTATGCGGCCTGGATTTGCCCCCAATTTCATTACTCCTTACCACCTTCAAAGGCAGGGTCAGTCTGGACATAGGACAGGAGTTCGACGAAATGGAAACTTTCAACCGGTGCAACAGAACCAGATGCTACATCGTAATTCCAACCAAGGGTTTCGATACATGTCTAATGGTCGAAATGGTCCAACTACTATGCACTTTGATGGTTCTGGAATTAATGCAGCACCTAATGATGGTCAGCGTTCTGGAGCAGTGTCTACTACACTTGCATCCGCTCTTGCATCTGCCACTCCAGAAAATCAACGCATGATGTTGGGGGAACATTTATATCCTCTTGTGGAGCGTCTCACATTAAACCAATACACAGCGAAGGTGACTGGAATGTTGCTGGAAATGGACCAGTCAGAAGTAATCAATCTCATTGAATCTCCTGAGGACCTGAAGACAAAGGTGTCTGAGGCGATGCAGGTATTGTATGAGGCTACACCTGATTCTGCAGTTGGTGATCAGATTGGATCATTGTCTGTGAATGAATGA 1908 0.4303 MAAAVVSSPMTQSVTATAAPSTALGGGPFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSTAQDASNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDNVTGQSKGYGFVQFDNEDAAQNAIKQLNGMLINDKQVYVGLFIRRQVRTNGSPKFTNVYVKNFSETFTDDDLTKLFGSYGTITSATLMKDMNGKSRGFGFVNFQSPDSAAAAVEVLNGSTIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLRDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHPGAPRLAPQQLYFGQGTPGFIPPQPAGYSFQQQILPGMRPGFAPNFITPYHLQRQGQSGHRTGVRRNGNFQPVQQNQMLHRNSNQGFRYMSNGRNGPTTMHFDGSGINAAPNDGQRSGAVSTTLASALASATPENQRMMLGEHLYPLVERLTLNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLYEATPDSAVGDQIGSLSVNE* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01304 635 Gene3D - 27 116 IPR012677 -
Phac7g01304 635 CDD RRM4_I_PABPs 312 390 - -
Phac7g01304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Phac7g01304 635 FunFam Polyadenylate-binding protein 538 620 - -
Phac7g01304 635 Pfam Poly-adenylate binding protein, unique domain 550 615 IPR002004 GO:0003723
Phac7g01304 635 SMART rrm2_1 33 106 IPR003954 GO:0003676
Phac7g01304 635 SMART rrm2_1 211 283 IPR003954 GO:0003676
Phac7g01304 635 SMART rrm2_1 314 386 IPR003954 GO:0003676
Phac7g01304 635 SMART rrm2_1 121 194 IPR003954 GO:0003676
Phac7g01304 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 615 IPR006515 GO:0003723
Phac7g01304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Phac7g01304 635 PANTHER RNA BINDING PROTEIN 31 94 - -
Phac7g01304 635 SUPERFAMILY RNA-binding domain, RBD 209 394 IPR035979 GO:0003676
Phac7g01304 635 SUPERFAMILY RNA-binding domain, RBD 31 201 IPR035979 GO:0003676
Phac7g01304 635 Gene3D - 540 619 - -
Phac7g01304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Phac7g01304 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 620 IPR002004 GO:0003723
Phac7g01304 635 FunFam Polyadenylate-binding protein 296 401 - -
Phac7g01304 635 CDD RRM3_I_PABPs 209 288 - -
Phac7g01304 635 Gene3D - 201 294 IPR012677 -
Phac7g01304 635 FunFam Polyadenylate-binding protein 121 195 - -
Phac7g01304 635 FunFam Polyadenylate-binding protein 199 295 - -
Phac7g01304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Phac7g01304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Phac7g01304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Phac7g01304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Phac7g01304 635 Gene3D - 295 399 IPR012677 -
Phac7g01304 635 Gene3D - 117 200 IPR012677 -
Phac7g01304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Phac7g01304 635 SMART poly_2 554 618 IPR002004 GO:0003723
Phac7g01304 635 CDD RRM2_I_PABPs 118 194 IPR045305 -
Phac7g01304 635 Coils Coil 282 310 - -
Phac7g01304 635 SUPERFAMILY PABC (PABP) domain 494 620 IPR036053 GO:0003723
Phac7g01304 635 FunFam Polyadenylate-binding protein 25 120 - -
Phac7g01304 635 SMART rrm1_1 211 283 IPR000504 GO:0003723
Phac7g01304 635 SMART rrm1_1 121 194 IPR000504 GO:0003723
Phac7g01304 635 SMART rrm1_1 33 106 IPR000504 GO:0003723
Phac7g01304 635 SMART rrm1_1 314 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01304 Phac-Chr7 8665232 8669490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01304 31 624 Eukaryotic Initiation Factors Gene Family AT1G71770 56.331 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01304 K13126 - gmx:100783163 1068.14