Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01214 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGCTTTGAGGTAAGGCTTCCAGGCCATAACAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTCATACAGAACAGCCGGTGGGCTAGCCTTCCCCCAGAGCTCCTTCGCGATGTTATTAATAGATTGGAAGCAAGTGAGAGTACATGGCCTGGTCGTAAGCATGTAGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAACTCTGTGGGAAGATTACTTTCCCTATCGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCATCTCTTCCTTTGCCTCAGTCCTGCCCTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACCAGAAGAACAACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACAAAGTTTATAATTTATGATACACAACCACCGTACAACAATGCTATGCTGTCCCCACCTGGGCGTAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTTCCTAGCGGCAGCTACAACATTGGTCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGACCGCGAAGGATGAATTGTACAATGTACTCAATTCCTGCATCATCTCTTGAGCCTAATGGCGTTGTCCCAGGGCAGCCAGAGCTCCTTTCCCACCCCCTTGAGGATTCTTTCCGAAGTATATCCTTCTCAAAATCAATTGACAATTCAACCCGGTTTAGCAGCTCTAGGTTCTCAGACATAATGGGAACCGGCAATGAAGACCAGGAGGGGAAGGTTGTACCATTAGTTCTGAAGAACAAGTCCCCAAGGTGGCATGAACAGCTTCAGTGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTAAAGAATTTTCAGCTGATTGCTGCGACATCGATGACAGCCCCAGCCCCTATAGCGTCAGGACCTACACTATCCCACCCACCACAGTCTTCTTCTTCTGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGCTACCCTCTATCTGCATTTCAGGCTTTTGCTATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1296 0.4699 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPELCGKITFPIALKQPGHRNGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIGQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSHPLEDSFRSISFSKSIDNSTRFSSSRFSDIMGTGNEDQEGKVVPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSMTAPAPIASGPTLSHPPQSSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01214 431 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Phac7g01214 431 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Phac7g01214 431 FunFam Tubby-like F-box protein 110 431 - -
Phac7g01214 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Phac7g01214 431 Gene3D Tubby Protein; Chain A 113 425 IPR025659 -
Phac7g01214 431 PANTHER TUBBY-RELATED 35 429 - -
Phac7g01214 431 FunFam Tubby-like F-box protein 48 101 - -
Phac7g01214 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Phac7g01214 431 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Phac7g01214 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Phac7g01214 431 CDD F-box_AtTLP-like 53 97 - -
Phac7g01214 431 Pfam Tub family 114 426 IPR000007 -
Phac7g01214 431 Gene3D - 48 105 - -
Phac7g01214 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01214 Phac-Chr7 8003122 8007351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01214 1 431 TUB Transcription Factor Family AT1G76900 68.410 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac7g01214 Tub 3.1e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01214 K19600 - gmx:100817532 785.408