Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01193 ATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCTCCCAGCACATCTAGTCATGGGTCTGCACCTGACGATTATGATGCTCTTGGGGATGTATACATATGGGGAGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGCGCTGATAAAAGTGCTAGTTATTTCAGCCCAAGGACGGATGTTTTGCTCCCCAGGCCACTGGAGTCGAATGTGGTTTTAGATGTGCTTCAAATATCATGTGGTGTTAAGCATGCCGCTCTAGTCACAAGGCAGGGTGAACTTTTCACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGATTCAACCTCGTCTAGTTGAAGCAATGACTTCTGCAACTGTTGATTTTGTTGCCTGTGGGGAGTTTCATACCTGTGCTGTTACGATGTTTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGCCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCCCTAGAGGGGCTTCAAGTTGCTTTAGTCACCTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGTCAGCTCTTTACATTTGGGGATGGAACATTTGGTGTCCTCGGCCATGGAGATAGGGAAAATGTATCGTACCCAAGAGAAGTAGAATCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCACACTGCAGCTGTTGTAGAGGTTATTGTGACTCAATCAAGTGCTAGTGTATCGTCAGGTAAATTGTTTACATGGGGTGATGGAGATAAAAATCGTCTTGGACATGGAGACAAGGATGCTCGACTTGAACCAACTTGTGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGTGGGCACAGTTTGACAGTAGGGCTGACAACATCTGGTCAAGTTTTTACAATGGGAAGCACGGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTGCCAGGTTTGGTTGAAGACAAGCTTGCAGGAGAATCTGTTGAAGAAATTGCATGTGGCGCTTATCATGTTGCTGTTTTAACATGCAAAAATGAGGTTTACACTTGGGGGAAGGGTGCTAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTAGTGCACTGTCATTCATGTAGTTCTAGGAAAGCATCAAGAGCTGCACTGGCTCCAAATCCTGGAAAGCCTTATCGTGTATGTGATTCTTGTTTTGTAAAATTGAACAAGGTTGCAGAATCAGGCAATAATAATCGGAGGAATGCTCTACCTCGTTTGTCAGGTGAAAACAAGGATAGATTAGAGAAGTCTGACCTAAGATTGACCAAGACAGCTGTCTCTTCTAATATGGATTTGATAAAGCAGCTTGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAACCACAATCTTTGCTACAGCTTAAAGATGTTGTCTTGTCTACAGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACACAATCTGGAGTGAGTTCCAGGTCTGTGTCTCCATTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCCACACCTATTCCAACAACATCGGGGCTTTCCTTCACAAAAAGTATTGCCGATAGTTTGAAGAAAACAAATGAGCTTTTGAATCAGGAAGTATTGAAGTTACGTTCTCAGGTTGAGACCCTGAGACAGAGATGTGAAATGCAAGAATTAGAGCTTCAAAGGTCATCAAAAAAGACTCAGGAGGCTATGGCTCTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCCGAGAGGCTTCCTCCTGGCGCTTATGATGCTGAGAGCATCAGACCAGCTTACCTGCCAAACGGTCTGGAGCCAAATGGGATTCATTATCCAGACATAAATGGCGAGCATCACACCAGGGCTGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATTGGACTTGAATCATCCCTGATGAGCAGAACCGAAGGCATTTTGACTGGAAGCTATGGAGCTAATATTTACCAGCAAAACCGGGGATCTGTAACCTCTAACGGGACAGATGATTACCCGGATGTTAAATTGCCAAATGGCAACAGCGTGATTCAGACAGGTGGTAGTACTGTGTCTGATACTGTTGATGGTAGGGATTCTGGAAATTTTCAAGATGATGAGAGTGGTTTGAGATCAAGGAATGCCATGATACCTGCTAATAGTAGTCAAGTTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTATATAACACTCGTCGCCCTGCGTGATGGAACAAGAGATCTGAAACGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCTGAGACTTGGTGGTCGGAGAACCGCGATAGGGTGTACGAAAGGTACAATGTTCGAAGCACCGACAAGTCTTCCGGCCAAGCTGCACGTAGGGCAGATGGTGCTGGTTCACCTGTTTTATAA 2757 0.4509 MQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGADKSASYFSPRTDVLLPRPLESNVVLDVLQISCGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVEAMTSATVDFVACGEFHTCAVTMFGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKLPGLVEDKLAGESVEEIACGAYHVAVLTCKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKASRAALAPNPGKPYRVCDSCFVKLNKVAESGNNNRRNALPRLSGENKDRLEKSDLRLTKTAVSSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTQSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFTKSIADSLKKTNELLNQEVLKLRSQVETLRQRCEMQELELQRSSKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAESIRPAYLPNGLEPNGIHYPDINGEHHTRAESISGSSLASIGLESSLMSRTEGILTGSYGANIYQQNRGSVTSNGTDDYPDVKLPNGNSVIQTGGSTVSDTVDGRDSGNFQDDESGLRSRNAMIPANSSQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSGQAARRADGAGSPVL* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 97 148 IPR000408 -
Phac7g01193 918 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 242 252 IPR000408 -
Phac7g01193 918 FunFam PH, RCC1 and FYVE domains-containing protein 1 257 428 - -
Phac7g01193 918 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 489 IPR017455 -
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 96 IPR000408 -
Phac7g01193 918 FunFam Putative E3 ubiquitin-protein ligase HERC1 429 497 - -
Phac7g01193 918 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 83 93 IPR000408 -
Phac7g01193 918 MobiDBLite consensus disorder prediction 897 918 - -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 366 387 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 190 206 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 80 93 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 149 165 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 308 326 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 99 115 IPR000408 -
Phac7g01193 918 PRINTS Chromosome condensation regulator RCC1 signature 206 220 IPR000408 -
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 149 203 IPR000408 -
Phac7g01193 918 CDD FYVE_like_SF 432 485 - -
Phac7g01193 918 Gene3D - 5 259 IPR009091 -
Phac7g01193 918 Gene3D - 260 436 IPR009091 -
Phac7g01193 918 MobiDBLite consensus disorder prediction 496 516 - -
Phac7g01193 918 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 256 - -
Phac7g01193 918 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 18 694 - -
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 204 255 IPR000408 -
Phac7g01193 918 MobiDBLite consensus disorder prediction 584 615 - -
Phac7g01193 918 Pfam FYVE zinc finger 423 489 IPR000306 GO:0046872
Phac7g01193 918 MobiDBLite consensus disorder prediction 793 812 - -
Phac7g01193 918 SMART fyve_4 421 490 IPR000306 GO:0046872
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 318 IPR000408 -
Phac7g01193 918 MobiDBLite consensus disorder prediction 584 601 - -
Phac7g01193 918 Pfam Transcription factor regulating root and shoot growth via Pin3 839 894 IPR013591 -
Phac7g01193 918 SUPERFAMILY RCC1/BLIP-II 34 424 IPR009091 -
Phac7g01193 918 Coils Coil 623 664 - -
Phac7g01193 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 495 IPR013083 -
Phac7g01193 918 SUPERFAMILY FYVE/PHD zinc finger 423 495 IPR011011 -
Phac7g01193 918 MobiDBLite consensus disorder prediction 790 823 - -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 149 200 IPR000408 -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 372 419 IPR000408 -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 97 145 IPR000408 -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 204 252 IPR000408 -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 318 367 IPR000408 -
Phac7g01193 918 Pfam Regulator of chromosome condensation (RCC1) repeat 266 313 IPR000408 -
Phac7g01193 918 Coils Coil 679 699 - -
Phac7g01193 918 ProSiteProfiles BRX domain profile. 840 895 IPR013591 -
Phac7g01193 918 Pfam Transcription factor BRX N-terminal domain 674 708 IPR027988 -
Phac7g01193 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Phac7g01193 918 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 190 200 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01193 Phac-Chr7 7700921 7707778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01193 841 911 Major Intrinsic Protein MIP AT1G31880 47.887 1.72e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01193 - - gmx:100783270 1665.2