Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01100 ATGGATGATATTGAGAAAGGGATCACAAAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGAATATAACATGGGCAAACTGGCAAAGCAAGATTCAGAGAAGGATAATTTAATACGTGAACAAGCATTGCTATCCTGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGTAAGCATACTTCTGACATTGAGAATGGACCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGACTAAATCGGAATTGAATCCTGATGCATTGAAATATTTAGATTCTGATGATATGAAAGAAATCCAAAGTATCAGTTCCCACCGTTCCTTAAATACCAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTCGAAAGCCGGTGTGCTACGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATATGTGAAGAATTGCAAATGGTCAAAGACCAAAGTGCTGCACTTATGAAGCAAATTTCTGAGTCCCAGTGTACGGCAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAAAATTTGGTGAAGCAGATACTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTCTTGGAGATCAATGAGGCAACTCATGATTTTGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTGAGAGTCTATCAGAGTTCCAACATCAGGTAGAGGTCTTGAGCAGGGTAAGACATCCAAACTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTATATAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCGTTGCTACAGATATATGCTCAGCTCTAATCTTCATTCACTCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCTAACTTCGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGCATTCAGCTGATGCAAGCACAGTGTGTAACAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAGTGGCAAGTTTACACCAGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAGCTTCTAACTGGAAGACCACTTTTGGGGTTAGTTAGGGATATGAAGTGTGCATTGGAAAAAGAAAACCTTAAAGCAGTCTTGGACCTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGAGTTGGTTGAACAGGCCAGACCTTGTGTCAGAAATTTGGAGTGTTCTTGAACCATTCAAAGCTACTCGCATTGACAAACCATATTTGATTTCCAAGAAGCTTCATCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGCAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTAGTACCTAACTATGCTCTACATAATGCAATTATGGAGTGGCAGCAACAGTAA 1884 0.4076 MDDIEKGITKAIAQHSIRWLVVGAAADEYNMGKLAKQDSEKDNLIREQALLSCNIWFICKGNLICTRVYSKHTSDIENGPALLVLNSNTEKTKSELNPDALKYLDSDDMKEIQSISSHRSLNTKWSFNKVMDRSKLADLMFHEDEAFESRCATEIRRRKEVEEQLARSKQEVQKMKNQQDEICEELQMVKDQSAALMKQISESQCTATEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRKFGEADTSFSYQVEFPAFSFLEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGRESLSEFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYINNGSLESHLARKEKNPLPWQIRISVATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLHSADASTVCNNPNERLAYVDPEYFVSGKFTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDLSAGEWPLYQTELLAYLALRCCEKSWLNRPDLVSEIWSVLEPFKATRIDKPYLISKKLHRVPSHFVCPIVQEVMEDPYIAADGFTYEAEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAIMEWQQQ* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01100 627 Pfam U-box domain 558 626 IPR003613 GO:0004842|GO:0016567
Phac7g01100 627 Coils Coil 151 192 - -
Phac7g01100 627 ProSiteProfiles U-box domain profile. 557 627 IPR003613 GO:0004842|GO:0016567
Phac7g01100 627 SUPERFAMILY Protein kinase-like (PK-like) 252 537 IPR011009 -
Phac7g01100 627 CDD RING-Ubox_WDSUB1-like 559 614 - -
Phac7g01100 627 PANTHER OS02G0152300 PROTEIN 1 623 - -
Phac7g01100 627 Pfam Protein tyrosine and serine/threonine kinase 281 529 IPR001245 GO:0004672|GO:0006468
Phac7g01100 627 ProSiteProfiles Protein kinase domain profile. 276 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac7g01100 627 SUPERFAMILY RING/U-box 555 627 - -
Phac7g01100 627 Gene3D Transferase(Phosphotransferase) domain 1 349 543 - -
Phac7g01100 627 SMART Ubox_2 561 624 IPR003613 GO:0004842|GO:0016567
Phac7g01100 627 ProSitePatterns Protein kinases ATP-binding region signature. 282 303 IPR017441 GO:0005524
Phac7g01100 627 Gene3D Phosphorylase Kinase; domain 1 249 348 - -
Phac7g01100 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 627 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01100 Phac-Chr7 6908864 6918583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01100 3 95 U-box Gene Family AT3G49060 40.860 1.10e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phac7g01100 PK_Tyr_Ser-Thr 2.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01100 - - pvu:PHAVU_007G072300g 1159.05