Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01098 ATGAAAGAAATCCAAAGTATCAGTTCCCACCGTTCCTTAAATACCAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTCGAAAGCCGGTGTGCTACGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATATGTGAAGAATTGCAAATGGTCAAAGACCAAAGTGCTGCACTTATGAAGCAAATTTCTGAGTCCCAGTGTACGGCAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAAAATTTGGTGAAGCAGATACTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTCTTGGAGATCAATGAGGCAACTCATGATTTTGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTGAGAGTCTATCAGAGTTCCAACATCAGGTAGAGGTCTTGAGCAGGGTAAGACATCCAAACTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTATATAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCGTTGCTACAGATATATGCTCAGCTCTAATCTTCATTCACTCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCTAACTTCGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGCATTCAGCTGATGCAAGCACAGTGTGTAACAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAGTGGCAAGTTTACACCAGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAGCTTCTAACTGGAAGACCACTTTTGGGGTTAGTTAGGGATATGAAGTGTGCATTGGAAAAAGAAAACCTTAAAGCAGTCTTGGACCTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGAGTTGGTTGAACAGGCCAGACCTTGTGTCAGAAATTTGGAGTGTTCTTGAACCATTCAAAGCTACTCGCATTGACAAACCATATTTGATTTCCAAGAAGCTTCATCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGCAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTAGTACCTAACTATGCTCTACATAATGCAATTATGGAGTGGCAGCAACAGTAA 1560 0.4154 MKEIQSISSHRSLNTKWSFNKVMDRSKLADLMFHEDEAFESRCATEIRRRKEVEEQLARSKQEVQKMKNQQDEICEELQMVKDQSAALMKQISESQCTATEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRKFGEADTSFSYQVEFPAFSFLEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGRESLSEFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYINNGSLESHLARKEKNPLPWQIRISVATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLHSADASTVCNNPNERLAYVDPEYFVSGKFTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDLSAGEWPLYQTELLAYLALRCCEKSWLNRPDLVSEIWSVLEPFKATRIDKPYLISKKLHRVPSHFVCPIVQEVMEDPYIAADGFTYEAEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAIMEWQQQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01098 519 Pfam U-box domain 450 518 IPR003613 GO:0004842|GO:0016567
Phac7g01098 519 ProSiteProfiles U-box domain profile. 449 519 IPR003613 GO:0004842|GO:0016567
Phac7g01098 519 SUPERFAMILY Protein kinase-like (PK-like) 144 429 IPR011009 -
Phac7g01098 519 SUPERFAMILY RING/U-box 447 519 - -
Phac7g01098 519 Gene3D Transferase(Phosphotransferase) domain 1 241 435 - -
Phac7g01098 519 SMART Ubox_2 453 516 IPR003613 GO:0004842|GO:0016567
Phac7g01098 519 PANTHER OS02G0152300 PROTEIN 19 515 - -
Phac7g01098 519 ProSiteProfiles Protein kinase domain profile. 168 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac7g01098 519 CDD RING-Ubox_WDSUB1-like 451 506 - -
Phac7g01098 519 Gene3D Phosphorylase Kinase; domain 1 141 240 - -
Phac7g01098 519 Coils Coil 43 84 - -
Phac7g01098 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 519 IPR013083 -
Phac7g01098 519 ProSitePatterns Protein kinases ATP-binding region signature. 174 195 IPR017441 GO:0005524
Phac7g01098 519 Pfam Protein tyrosine and serine/threonine kinase 173 421 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01098 Phac-Chr7 6908864 6918583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01098 37 519 U-box Gene Family AT3G49060 52.254 2.59e-168 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phac7g01098 PK_Tyr_Ser-Thr 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01098 - - pvu:PHAVU_007G072300g 949.118