Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g01088 ATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTTTGGCTCAAATTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATCGAACGGTCTCTCTGATGTACATGTTTGATGTGGACGGGGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAGCCGGCATTGCAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGATTCCCTGTAAGCATCGGATTGTCTTGGCCCAAGGTGGTGGTGTGAAGAAAAGTTGTTCAAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTCTTGAGCATCACTTGCAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTCGTCCCAGAGCATGTGCTTCTGTTCAAACATTACTCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTCATGAACAAAAGGCTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGGTTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTGTTGAAGCAACAATTGAAAGAATTCACACGAGGCATGAATCTATTCCAATTGCCCCATCTTTTAGATCACCACCTAGACCTGATACTTCACCAAATATGGTGGAGGAAGTTCCACGTGATCCATCAGAACAACAACACATATTGATGTACTGTAATGGTACCAATCATGGAGCGAATCTCAGTGATAAAGCAGGTGGAAAAATTGATCATATGACTACTTTAGAGACTAAAAACTCAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTTCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGGTCTCTTCCTGAACCCTCTACTCCAAACAAGTTCAGCCAGCAAGTCTCAATGGGGATTAGACCATCAGAGCCTCAGATGAAAGTGAATGAATTGAATGCCTCCAAAGAATTAGAAACAAACAGACAAGCAGGAATGGAGGATCAATTGGTAGGAGGAAGGATAAGGAATCTTGAGAGAGTTAGTAATGATAAAGGAGGTTCTATTCAAGAGGTTGGGAGAGAACCGAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCACAGTTCGTGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGATCAATGTGCTGTCCTAAGGAGATCATCACCAGGGTCAACACTGCAGCCAGCCACTGATACACCAAACCACCCTACTTCTTACCCTATGCCTGAATTTGTGTCAGCAGAACTTCAAGAGCCATTTGGGGGGATGCTACTAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGTCCCTGAAGCTTCTGGGATTAATCCTCCAGCCTTGGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGTAGTGACACCTTTTGCAGCTACAAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGGGAAGATATCATAAGATTCCGGGTCTCATTGGCATGTGGCATTGTGGAACTTAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTTGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTCTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2589 0.4291 MTQALRYFKELTELNVLAQIWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFDVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRIVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACLEHHLQQSQGVAGRAFSSQSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRITDFHEQKALLASILATMKQHFQSLKVASGVELEDGSIEIVEATIERIHTRHESIPIAPSFRSPPRPDTSPNMVEEVPRDPSEQQHILMYCNGTNHGANLSDKAGGKIDHMTTLETKNSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFSQQVSMGIRPSEPQMKVNELNASKELETNRQAGMEDQLVGGRIRNLERVSNDKGGSIQEVGREPKRTRTGSGSSEDSTNPTSHSSWHDSPPNESSPVKDIFITSNHDQCAVLRRSSPGSTLQPATDTPNHPTSYPMPEFVSAELQEPFGGMLLEDAGSSKDLRNLCPSVAEAILEDLVPEASGINPPALDLSPKQSMGTPNKVVTPFAATKEMKTVTIKATYREDIIRFRVSLACGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g01088 862 ProSiteProfiles PB1 domain profile. 767 849 IPR000270 GO:0005515
Phac7g01088 862 MobiDBLite consensus disorder prediction 381 401 - -
Phac7g01088 862 SUPERFAMILY CAD & PB1 domains 763 852 - -
Phac7g01088 862 ProSiteProfiles RWP-RK domain profile. 444 525 IPR003035 -
Phac7g01088 862 PANTHER PROTEIN NLP8 1 861 IPR045012 GO:0003700
Phac7g01088 862 FunFam RWP-RK domain-containing protein 764 848 - -
Phac7g01088 862 MobiDBLite consensus disorder prediction 623 651 - -
Phac7g01088 862 Pfam PB1 domain 767 848 IPR000270 GO:0005515
Phac7g01088 862 MobiDBLite consensus disorder prediction 667 689 - -
Phac7g01088 862 MobiDBLite consensus disorder prediction 667 686 - -
Phac7g01088 862 Pfam RWP-RK domain 457 505 IPR003035 -
Phac7g01088 862 CDD PB1_NLP 768 848 IPR034891 -
Phac7g01088 862 MobiDBLite consensus disorder prediction 578 651 - -
Phac7g01088 862 SMART PB1_new 767 849 IPR000270 GO:0005515
Phac7g01088 862 Gene3D - 764 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g01088 Phac-Chr7 6886904 6891526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g01088 131 862 NLP Transcription Factor Family AT4G24020 52.520 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac7g01088 PB1 5.3e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g01088 - - gmx:100786118 1548.1