Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00987 ATGGTGAGGGGAAAGGTTCAAATGAAAAAAATTGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTAGAAATGGTCTTCTAAAGAAAGCTTATGAGCTATCCGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCGCCCAGAATGGAAGGCTCTATGAGTTCTCAAGTTGCGACATGTCAAAGATTTTGGAACGATACAGTGAATATACGAAGGATGTTCCTGCAAATAAGCTTGGAGACGATTATATTCAGCAACTGAAGTTAGAATCCGCAAGCATGGCAAAGAAGATTGAGCTTCTTGAAATTTCTAAAAGGAAGCTGCTGGGAGAAAGCGTGAGTTGTTCCTATGATGAACTGAAAGGAATTGAGGATCAGCTGCAGAGAAGTTTGCTAAGAATCAGACAAAGAAAGGCTCAACTGTATATGGAGCAGATTGATCAACTACGATCCCAGGAGAGTAACCTGCTCCAAGAGAATGCCAAATTAACTGAAATGAACTTGATTCAACATTAG 522 0.4061 MVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFAQNGRLYEFSSCDMSKILERYSEYTKDVPANKLGDDYIQQLKLESASMAKKIELLEISKRKLLGESVSCSYDELKGIEDQLQRSLLRIRQRKAQLYMEQIDQLRSQESNLLQENAKLTEMNLIQH* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00987 173 Pfam K-box region 86 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00987 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Phac7g00987 173 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Phac7g00987 173 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Phac7g00987 173 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Phac7g00987 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Phac7g00987 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g00987 173 ProSiteProfiles K-box domain profile. 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00987 173 Coils Coil 141 168 - -
Phac7g00987 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00987 Phac-Chr7 6091401 6108960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00987 1 143 MADS-box Gene Family AT5G62165 64.828 4.37e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac7g00987 K-box 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00987 - - gmx:100800580 268.855