Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00980 ATGGGAAGAGGGAAGGTCGTTCTGGAGAGAATACACAACAAGATCAATCGCCAAGTCACCTTCTCAAAGCGTAGAAACGGTTTGTTAAAGAAAGCCTTCGAACTATCTGTGCTATGCGACGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTACCACTGACATTAACAGAATCATTGAGAGGTATCGTCAATGCTGCTTCAGCATGTCTCAGACTGGCGACGAAGCTGCACATCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAACATGAATCACTCCAGCGAACTCAAAGGAATCTTATGGGAGAAGAGCTTGAGCCACTTAGCATGAAAGAATTGCATAGCTTAGAGAAACAATTGGATAGAACCCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCTAAGGAAACAGGCAAATGCACTCAGATTTCTGAAGATTCTACTAATCAGTTTGAAGCTGGAACAGCAGGTTCGCTGCGGCTTCAGCAGGAGCAAAGTAGTTCAAAAGGAAAAGAAATAGACACGAATAACCAATGGCAGCTTTCAATAAAATGA 663 0.4374 MGRGKVVLERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSTTDINRIIERYRQCCFSMSQTGDEAAHQSEQCLYQELLVLRVKHESLQRTQRNLMGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINRHLESKETGKCTQISEDSTNQFEAGTAGSLRLQQEQSSSKGKEIDTNNQWQLSIK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00980 220 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Phac7g00980 220 Coils Coil 125 145 - -
Phac7g00980 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 MobiDBLite consensus disorder prediction 195 220 - -
Phac7g00980 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00980 220 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00980 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 Coils Coil 151 171 - -
Phac7g00980 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac7g00980 220 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Phac7g00980 220 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac7g00980 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Phac7g00980 220 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Phac7g00980 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00980 Phac-Chr7 6040354 6046511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00980 1 175 MADS-box Gene Family AT3G02310 51.705 2.83e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac7g00980 K-box 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00980 K09264 - gmx:100802197 364.385