Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00978 ATGGGAAGAGGGAAGGTCGTTCTGGAGAGAATACACAACAAGATCAATCGCCAAGTCACCTTCTCAAAGCGTAGAAACGGTTTGTTAAAGAAAGCCTTCGAACTATCTGTGCTATGCGACGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTACCACTGACATTAACAGAATCATTGAGAGGTATCGTCAATGCTGCTTCAGCATGTCTCAGACTGGCGACGAAGCTGCACATCAATCGGAGCAGGAGCTTTTGGTATTAAGAGTCAAACATGAATCACTCCAGCGAACTCAAAGGAATCTTATGGGAGAAGAGCTTGAGCCACTTAGCATGAAAGAATTGCATAGCTTAGAGAAACAATTGGATAGAACCCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCTAAGGAAACAGGCAAATGCACTCAGATTTCTGAAGATTCTACTAATCAGTTTGAAGCTGGAACAGCAGGGGCAAAAGGACATGAAATCTTTTGGCAAGGTGAAAGGAAAGATGATCAAAATTAA 621 0.4364 MGRGKVVLERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSTTDINRIIERYRQCCFSMSQTGDEAAHQSEQELLVLRVKHESLQRTQRNLMGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINRHLESKETGKCTQISEDSTNQFEAGTAGAKGHEIFWQGERKDDQN* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00978 206 Coils Coil 121 141 - -
Phac7g00978 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac7g00978 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Phac7g00978 206 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00978 206 ProSiteProfiles K-box domain profile. 84 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00978 206 Coils Coil 147 167 - -
Phac7g00978 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac7g00978 206 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Phac7g00978 206 MobiDBLite consensus disorder prediction 183 206 - -
Phac7g00978 206 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Phac7g00978 206 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00978 Phac-Chr7 6040354 6046511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00978 1 171 MADS-box Gene Family AT3G02310 51.429 2.93e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac7g00978 K-box 9.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00978 K09264 - gmx:100802197 323.553