Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00975 ATGGGAAGAGGGAAGGTCGTTCTGGAGAGAATACACAACAAGATCAATCGCCAAGTCACCTTCTCAAAGCGTAGAAACGGTTTGTTAAAGAAAGCCTTCGAACTATCTGTGCTATGCGACGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTACCACTGACATTAACAGAATCATTGAGAGGTATCGTCAATGCTGCTTCAGCATGTCTCAGACTGGCGACGAAGCTGCACATCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAACATGAATCACTCCAGCGAACTCAAAGGAATCTTATGGGAGAAGAGCTTGAGCCACTTAGCATGAAAGAATTGCATAGCTTAGAGAAACAATTGGATAGAACCCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCTAAGGTTTTTCATTAA 525 0.44 MGRGKVVLERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSTTDINRIIERYRQCCFSMSQTGDEAAHQSEQCLYQELLVLRVKHESLQRTQRNLMGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINRHLESKVFH* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00975 174 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Phac7g00975 174 Coils Coil 125 145 - -
Phac7g00975 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 ProSiteProfiles K-box domain profile. 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac7g00975 174 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac7g00975 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Phac7g00975 174 Coils Coil 151 171 - -
Phac7g00975 174 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac7g00975 174 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Phac7g00975 174 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Phac7g00975 174 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00975 Phac-Chr7 6040354 6046511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00975 1 171 MADS-box Gene Family AT3G02310 51.744 4.36e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac7g00975 K-box 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00975 K09264 - gmx:100802197 313.538