Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00960 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGGTCTCCAACCGCAACACAAAATCTCTAAAGATCTCATCCTGGATGATCACAATATCGATAATTCTCCCCTTGTCGCTTATTCAGATAAAAAATTGCGTACTAGCCACCCCAACAAACTTTTTTATGCGTCTGAAACCAGTCAGGCTAATTCTACCCAAGAAGAATCTGCAAAAAAGATGGTTCACAGGGACATTGAGAGGAAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCCCTTCATCAAGGGAAAGCGTTCCATATCTGATCAAATGAGTGAGGCAGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAGTTGAGTGACAAGAGGGACAAGCTGAAGAAGAAACTTCTCATAAACTCCACCCTCGAAAGCCGTGAGAACAAGCATGAATCTAGGGGTTTCACTGTCCACCAAAATAGTAGTGGAGCTGTGGGGATTGAAATCAGTGGATTAAGTGAGGAAGGGGTTTCACTTTCTAAATTGCTGGAACTAGTGTTAGAAGAGGGACTTGAAGTTGTTTGCTGTCTTTCAACTAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGGTATGTACGTATAGTCCAGGGATAGATTCTTGTCTTCTAGTTATGTTATACGTTTTTTTTCTGTGA 720 0.4153 MFPLQRGNELVIQFSNGLQPQHKISKDLILDDHNIDNSPLVAYSDKKLRTSHPNKLFYASETSQANSTQEESAKKMVHRDIERKRRQEMATLHASLRSLLPLPFIKGKRSISDQMSEAVNYINHLQKNIKELSDKRDKLKKKLLINSTLESRENKHESRGFTVHQNSSGAVGIEISGLSEEGVSLSKLLELVLEEGLEVVCCLSTKVNGRLLHSLQCEVCTYSPGIDSCLLVMLYVFFL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00960 239 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Phac7g00960 239 Gene3D - 63 157 IPR036638 GO:0046983
Phac7g00960 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Phac7g00960 239 CDD bHLH_AtORG2_like 74 137 - -
Phac7g00960 239 FunFam Transcription factor bHLH126 65 154 - -
Phac7g00960 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 145 IPR036638 GO:0046983
Phac7g00960 239 SMART finulus 79 131 IPR011598 GO:0046983
Phac7g00960 239 Coils Coil 115 142 - -
Phac7g00960 239 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00960 Phac-Chr7 5943428 5944883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00960 70 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 47.682 8.64e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac7g00960 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00960 - - pvu:PHAVU_007G064300g 349.747