Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00952 ATGCCTTCAGTCTCTCTCTCCGTCAGTGACACCACCCTTCAAGAAAACAAGAAGCTTAGTGCTAAGAAAGCCAAGAACCAATCCCCAATCATTGCGGAGAAGAATAGTCCCTCGAAACTCCTTTCAAATCCTAACGCCCCCGATTCCGACCAAGATGGGGTTTCGGGGAAGCTCCAGAAGAAGGCCAAGAAGCGCAAGGCTTCAGATATAGAGGCCATGGCGGCAACCAACGATGCCGACGAAGATACTAGTTCCGAACTGGTCGAGCCCGAATCTTCTAGGGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGTTAAGTCGGAAGAACAACCTTTGGTGATGGAAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCGGTCTCCAAATTCAGGATATCCGAACCGTTGAGGCTAAAATTGAAGGAGAAGGGAATCGAATCGTTGTTTCCCATTCAGGCCATGACTTTCGATTTAGTTCTTGACGGTTCTGATTTGGTTGGTCGGGCTCGCACGGGTCAGGGTAAAACTCTGGCATTTGTGCTTCCCATATTGGAGTCTTTAACAAATGGTCCAGCTAAGTCTTCTAGAAAGACTGGCTACGGGAGGACTCCAAGCGTTCTTGTGCTTCTACCAACTAGAGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGTGCGATGGGATTGAGTGCTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTTATTGGCACACCAGGTCGTGTAAAGGATCATATCGAGAGGGGAAATATAGACCTGAGCCAACTAAAATTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTATTGAAGATGTTGAATTGATTCTAGGAAAGGTTGAAAATGTTAATAAAGTTCAGACTCTTCTTTTCAGCGCTACTTTGCCATACTCTATTAAACAAATCGCCGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTCTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGACATATTGCTCTCCCTTGTTCTGCTTCTGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCCTCTCAGCTTGCTGGGTTGTTACCTGGAGCCCGAGCTCTCCATGGTGACATACAGCAAGCACAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGTGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTTCCACGGGAGGTTGAGTCCTATATCCATCGATCTGGACGAACAGGAAGAGCAGGTAATACTGGGGTAGCTGTTACACTCTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAGCACATATCTGCCCCTCGGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCCGCTGAAATGATTACCCAAGTTTCTGATAGTGTGATTCCTGCATTCAAAGCTACTGCTGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTACTTGCAAAGGCTCTTGCTAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAGAACCATGTTACATTGCTTCTTGAAATTGGGAAACCAATCTTCACCCCTTCTTTTGCCTATGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTCTTTGATGTACCAGCTGAAGAATTAGATACATATCTTAGTGGTCAGGAAAATGCAGCTAATGTAAGTCTAGAGGTTCTGAAAGCCTTGCCCCGTTTGCAACAGAGAGAACAATCAAGAGGTGGCAGATTTGGTGACGGTGGTGGTCGAGGTGGTGGGAACAGGTTTGGAAGAGGTGGAGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 2139 0.4469 MPSVSLSVSDTTLQENKKLSAKKAKNQSPIIAEKNSPSKLLSNPNAPDSDQDGVSGKLQKKAKKRKASDIEAMAATNDADEDTSSELVEPESSREDDHKKKKKKKKVKSEEQPLVMEEEKEEKKEDPNAVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSACCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFIEDVELILGKVENVNKVQTLLFSATLPYSIKQIAAQFLKPDKKTADLLGNTKMKASTNVRHIALPCSASARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKATAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENHVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEELDTYLSGQENAANVSLEVLKALPRLQQREQSRGGRFGDGGGRGGGNRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00952 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Phac7g00952 712 Gene3D - 580 651 - -
Phac7g00952 712 SMART ultradead3 147 359 IPR014001 -
Phac7g00952 712 MobiDBLite consensus disorder prediction 108 126 - -
Phac7g00952 712 MobiDBLite consensus disorder prediction 1 15 - -
Phac7g00952 712 Pfam DEAD/DEAH box helicase 152 329 IPR011545 GO:0003676|GO:0005524
Phac7g00952 712 Gene3D - 73 341 IPR027417 -
Phac7g00952 712 MobiDBLite consensus disorder prediction 54 71 - -
Phac7g00952 712 MobiDBLite consensus disorder prediction 29 52 - -
Phac7g00952 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Phac7g00952 712 FunFam DEAD-box ATP-dependent RNA helicase 7 579 651 - -
Phac7g00952 712 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Phac7g00952 712 SMART helicmild6 396 473 IPR001650 -
Phac7g00952 712 Gene3D - 362 579 IPR027417 -
Phac7g00952 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 485 IPR027417 -
Phac7g00952 712 CDD SF2_C_DEAD 356 482 - -
Phac7g00952 712 CDD GUCT_RH7_like 569 654 - -
Phac7g00952 712 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 89 531 - -
Phac7g00952 712 SUPERFAMILY RNA-binding domain, RBD 566 649 IPR035979 GO:0003676
Phac7g00952 712 CDD DEADc 143 336 - -
Phac7g00952 712 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Phac7g00952 712 MobiDBLite consensus disorder prediction 1 126 - -
Phac7g00952 712 MobiDBLite consensus disorder prediction 658 712 - -
Phac7g00952 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 341 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00952 Phac-Chr7 5887958 5892923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00952 165 509 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 5.39e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00952 K16911 - gmx:100820207 996.112