Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00890 ATGCTTGGTGATATGCAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAGTCTGTTCACATTACTCAAACCTTCAATTCGCTCAGCTTTTCATCCCCTCCGTCTGTTTTCACATCACCCCATGTCAACTGTCACAGGGAATCCAGATTCCTCAGGAGGCATAACCTCTTGGACGCATCCAAACCTAAGGGTTCATCTGAAGATATAAATAATGTTTATTCATGTGAAAAGACTCCAGCAGATTCATCTCAGCCATGTCATGAATCAAGTGAGCCGCAGGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAAACGAGCTATGTAATGAAAACCGAAATATCTCAATTGAGGTCCCACAAGGCCTAAAATATAATTTGGCTAGCCCAGGGTATGATCCTGTGATCTCTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAGCCAGGATCAGATGTTGCCTATGTTCCAGATGACTCTGAAAAGAATTCAATTGAGGGTGAAATGCATCCTCCAGGTTTAAGTCAAAATGAGGAAAAAATTGAAGGCTCGGATTGTGGTGTGGATGATTTAATTACTGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATTTGACAGAAGCTTTTAAGGATATAAACAAACAATTAAATCCTTCTACAAAGCTTACCAATTTTAGGACTTTGTTACAACAATCTGCCACCAATGATGGTCAACAAATGCACATTGTTGATGCAGTTGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAATCTGGAGCAGCCACAGACACAGTTCAGAGACAGGACAATCATAGCAATGTTGCTTTGGTGGCTAGCAATCCAACTGAGAAAATGGATGATAAGCTTCTTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAACCTAGATGGTAAATCACACACCAATTCTAGTACAGAAAAGTCTGATGAGATGGATGTTAGTAAAGGAAAGCAAGTGCTCCCTATAAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAACCTTAAATGATTGCAAAAACATAAAAATTGAGAAGTTGCTAGCTGGAAGGCAACCTAACATGCCCAGCTCCTCTTCATCCGTGCAACTTTCTGCAAGCCAAGAACATCAACTAGCATTGGTGCCTGCATCAGTGGAAAAAGATTTGGAGCCATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGCTTCTCATGGCTGGTGAAGATTTCCAGCAGAATAGTCCAAAAAGGAAAAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTAAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCATGTTCATGTCGTGATTGCTTCAACAAGCCTATTCATGTTGATACCGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCTTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAGAATATTGAAAACCATCCAGACCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGCTCCCATTACCCTTTTCATCAAAGGGCAAGCCACCGAGATCTTTTGTTACTACAATCTCCAGTTCTGGATTGTTTGTGAGCCAAAAGCTCGGGAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGACAAGCCTTTGCAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATTTTACAATCTATCCCTTCCTTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2283 0.4253 MLGDMQDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKPKGSSEDINNVYSCEKTPADSSQPCHESSEPQENTNPNISIRDASNELCNENRNISIEVPQGLKYNLASPGYDPVISADEADSLLELPGKPGSDVAYVPDDSEKNSIEGEMHPPGLSQNEEKIEGSDCGVDDLITEASDLLMFSPPNLTEAFKDINKQLNPSTKLTNFRTLLQQSATNDGQQMHIVDAVASGSEHEIENHPCESGAATDTVQRQDNHSNVALVASNPTEKMDDKLLYVTHRGIRRRCLDFEMASVQRKNLDGKSHTNSSTEKSDEMDVSKGKQVLPIKHSGDSRKCVLPGIGLHLNALATLNDCKNIKIEKLLAGRQPNMPSSSSSVQLSASQEHQLALVPASVEKDLEPSENEVQPGEDCTQPLLLMAGEDFQQNSPKRKRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVPSGIEAKPEEETEACEKGVMENASHKTETQNIENHPDHALPTTPLRLSRSLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFDKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00890 760 MobiDBLite consensus disorder prediction 71 108 - -
Phac7g00890 760 SMART CXC_2 556 597 IPR033467 -
Phac7g00890 760 SMART CXC_2 470 511 IPR033467 -
Phac7g00890 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 473 508 IPR005172 -
Phac7g00890 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 559 594 IPR005172 -
Phac7g00890 760 MobiDBLite consensus disorder prediction 450 471 - -
Phac7g00890 760 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 755 IPR044522 GO:0003700
Phac7g00890 760 MobiDBLite consensus disorder prediction 746 760 - -
Phac7g00890 760 ProSiteProfiles CRC domain profile. 471 596 IPR005172 -
Phac7g00890 760 MobiDBLite consensus disorder prediction 453 471 - -
Phac7g00890 760 MobiDBLite consensus disorder prediction 62 108 - -
Phac7g00890 760 MobiDBLite consensus disorder prediction 327 350 - -
Phac7g00890 760 MobiDBLite consensus disorder prediction 707 731 - -
Phac7g00890 760 MobiDBLite consensus disorder prediction 683 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00890 Phac-Chr7 5472586 5478413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00890 5 755 CPP Transcription Factor Family AT3G22780 41.645 7.61e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Phac7g00890 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00890 - - var:108326442 1354.73