Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00791 ATGGAGAAGGAGAAGGAGAAGGAGAAGCAGAATGAGCGGCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAATCATGATGATGGAGGCAATTCTGTAGAGGATTTGATGACGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCAAACTGCATGTCTGGTTTGAAACTGGAGAAAGCACGGGAAAATCGGTATCGGAGTCAGATTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACCAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGCTGCAGATGAAGGTTCGAACTGATGTGAGTTCTGAATACTGGCTCAATACTAAGTGTGCATTTCCGGACAGGCAACTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGAGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAAAAAATATTCAGATGGTTTTGAGCCATTGGAAGATTCTGAAGCTGATTTACCAGAGTCAGATGCTTTAAAGAATGGAATTTCTAAGGATTCACCTGTTGATGAAGATATTGATATGATGGATTCTGATCATAATGGGGATTCCAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCGTCTATACTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATCGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACGGCTATTCTTTATGATGGTCGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTCAATGTTTTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAACCACGAGTCTGCTCTGGCAAGAACCTTGGACAATGGCTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTACTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTATCCCTCACTGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCTTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCTTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGAAGAGTTGGGTTGGATAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGATTATGATATGTATAATCGAAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATCTATTTGCGACTTCATGATTTTAAGTATCTTCGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCGGATTCCCCATTCTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCGCAAATGGATCAACAAGCCGAGGACAGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAGGAGGTGATTCTAGAGCGTGCGAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAGCACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGGGAAGACATCTCAAAGTTTTCTGGAAAAGGAAAAAGAAGAGACCACCTCTCATCTGACAGCATTGCACAAGCCAGTGATAGCACAGTAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCTGAAAAATGCATACGAAGATGTTGGAACTGGTTTGAACCACCACATGTTATCATGGAATACCCACAAAAAGAAGAGGTCAAGTTTTCTTGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCAAACGGAAGAGCAAACTGGAACTGA 3243 0.4209 MEKEKEKEKQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSVEDLMTDLEDALSKQRPNCMSGLKLEKARENRYRSQIQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNTKCAFPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGFEPLEDSEADLPESDALKNGISKDSPVDEDIDMMDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHLSSDSIAQASDSTVVAEESLELRTESVPMANDRTSEDSFHVTPSKRFKSEGTNFLKNAYEDVGTGLNHHMLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00791 1080 FunFam Probable ATP-dependent DNA helicase CHR12 609 908 - -
Phac7g00791 1080 PANTHER SNF2/RAD54 HELICASE FAMILY 85 974 - -
Phac7g00791 1080 MobiDBLite consensus disorder prediction 297 349 - -
Phac7g00791 1080 Coils Coil 178 198 - -
Phac7g00791 1080 Gene3D - 609 909 IPR027417 -
Phac7g00791 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Phac7g00791 1080 MobiDBLite consensus disorder prediction 325 347 - -
Phac7g00791 1080 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 859 IPR001650 -
Phac7g00791 1080 SMART ultradead3 374 567 IPR014001 -
Phac7g00791 1080 MobiDBLite consensus disorder prediction 965 986 - -
Phac7g00791 1080 Pfam Helicase conserved C-terminal domain 689 802 IPR001650 -
Phac7g00791 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 856 IPR027417 -
Phac7g00791 1080 Gene3D - 347 602 IPR038718 -
Phac7g00791 1080 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 556 IPR014001 -
Phac7g00791 1080 Pfam SNF2-related domain 381 669 IPR000330 GO:0005524|GO:0140658
Phac7g00791 1080 SMART SnAC_2 895 955 IPR029295 GO:0042393
Phac7g00791 1080 MobiDBLite consensus disorder prediction 965 980 - -
Phac7g00791 1080 MobiDBLite consensus disorder prediction 1060 1080 - -
Phac7g00791 1080 Coils Coil 893 913 - -
Phac7g00791 1080 CDD SF2_C_SNF 680 813 - -
Phac7g00791 1080 SMART helicmild6 718 802 IPR001650 -
Phac7g00791 1080 Pfam Snf2-ATP coupling, chromatin remodelling complex 896 955 IPR029295 GO:0042393
Phac7g00791 1080 FunFam Chromatin structure-remodeling complex protein SYD 369 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00791 Phac-Chr7 4665158 4682323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00791 685 830 RAD5 or RAD16-like Gene Family AT5G43530 37.333 4.13e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g00791 SNF2_N 3.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00791 - - gmx:100786280 2016.12