Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00734 ATGTCGAAGATTAAAAAGTCTAGTTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCTAAGAAGAGTCATTTGCAAGTTACATTCTCTAAACGTCGTTCAGGAGTGTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGTGGGGTAGAGATCGCAATCGTGGTTTTCTCTCCTGCTGATAAGGCCTTCTCTTTTGGGCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACACGGAACCCTCCAGAAGACTCCAGTGCGCACCACCTCGTTGAGGCTCATCGAAATGCGAATGTTCGTGATCTCAACATGCAACTCACTCAGGCTTTTAACCTTTTGGAGGTTGAAAAGAAGCGAGGGGATGATCTGGACCATGTCAGCAAAGCTAGGCAGAGGCAGTTTTGGTGGGAGGGCCCTGTTGATGAGCTTGGATTGCATGAGCTGCTCCAGTTAAAGGCCTCCATTGAAGAGCTCAAGAAGAACATAGAAAAACATGCCAGCAAATTCATGATTGACCACTCTTCTGCTATATCTTCTTCTTCGTCAATTCTTGGACCTAATCATGGATTTGGTGCCCTTGAACGGTATGATGCCTTTGATAACAAACCTGATGTTGGGATTGCCATTGCTTCATCACTTCCTAATGCCCATTATCTCTCCTTTCGAACTGGGTATCTTTGA 684 0.4532 MSKIKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPEDSSAHHLVEAHRNANVRDLNMQLTQAFNLLEVEKKRGDDLDHVSKARQRQFWWEGPVDELGLHELLQLKASIEELKKNIEKHASKFMIDHSSAISSSSSILGPNHGFGALERYDAFDNKPDVGIAIASSLPNAHYLSFRTGYL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00734 227 PANTHER MADS BOX PROTEIN 11 166 - -
Phac7g00734 227 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Phac7g00734 227 SUPERFAMILY SRF-like 10 90 IPR036879 GO:0003677|GO:0046983
Phac7g00734 227 Coils Coil 149 169 - -
Phac7g00734 227 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Phac7g00734 227 Gene3D - 89 182 - -
Phac7g00734 227 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Phac7g00734 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Phac7g00734 227 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Phac7g00734 227 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Phac7g00734 227 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Phac7g00734 227 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Phac7g00734 227 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00734 Phac-Chr7 4097481 4098164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00734 6 171 Type I MADS-box Gene Family AT5G60440 53.846 9.77e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g00734 SRF-TF 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00734 - - gmx:100793705 387.497