Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00733 ATGGATTCAGGAGCAAAGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGTGGCCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGCGGAGCCCACGTGGCGCTGGTGGTGTTCTCGCCCGGCGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGATGCCGTCATCGACCGGTTTCTGGGGCGGGCCCCGGTGCAGGACTCCGGCACCATGCAGTTCATTGACGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAATGAACTTCTAGAAACGGAGAGGAAGCGCGGGGAGGAGCTGAGCCGGTTGAGGAAGGAGGCGCAGGAGCTGATGTGGTGGACCCGCCCCACTGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGGCAGCATTGGAGGAACTGAAGAAGCACGTTGCTCAACTTGCTGAGAGGGCTATGCTTCAGAGTGCTGTAAACCAGGGTCATCAGTTTTTCCCCGGGACTTCTTCCTCTGCCAATTTCGTGCCTCAGTCTCAGCATCAGCATCAGCATCAGCCTCAGCCTCAGCCTCCTCAGGTGTTCACTGCACAGACCATTCCTTCTATCCTTCAGAACTATATGTTCCCTGATGTAACCATCATGCAGCAACAGCATCACGGCTTCGATAACCTGGGGATGGGAGGGTATGGACCTGGTCCTGCTCCTGCTGCTGGATTTTTCTGA 777 0.5598 MDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRLRKEAQELMWWTRPTEELSVEQMEQYKAALEELKKHVAQLAERAMLQSAVNQGHQFFPGTSSSANFVPQSQHQHQHQPQPQPPQVFTAQTIPSILQNYMFPDVTIMQQQHHGFDNLGMGGYGPGPAPAAGFF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00733 258 Coils Coil 97 134 - -
Phac7g00733 258 Gene3D - 89 181 - -
Phac7g00733 258 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Phac7g00733 258 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Phac7g00733 258 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Phac7g00733 258 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Phac7g00733 258 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Phac7g00733 258 MobiDBLite consensus disorder prediction 183 211 - -
Phac7g00733 258 MobiDBLite consensus disorder prediction 1 21 - -
Phac7g00733 258 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Phac7g00733 258 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Phac7g00733 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Phac7g00733 258 Coils Coil 142 169 - -
Phac7g00733 258 PANTHER MADS BOX PROTEIN 11 166 - -
Phac7g00733 258 MobiDBLite consensus disorder prediction 1 18 - -
Phac7g00733 258 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Phac7g00733 258 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00733 Phac-Chr7 4086074 4087008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00733 5 189 Type I MADS-box Gene Family AT5G60440 57.979 2.84e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g00733 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00733 - - pvu:PHAVU_007G047900g 453.751