Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00732 ATGTCTTCAGAATCAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAAAGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGTACCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCTGACGTCGCACTTGTCGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCTAACGTCGACGCCGTGATTGACAGCTACCTCGCGCGGGCCCCGTCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCCAACGTGCGTGACCTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGCGGGGAGGCAGCACGGGGAGGAGTTGAATCGCATGAAGAAGGACTCACAGGCCCAGTTATGGTGGGCCCAGCCCATCGAGAAAATGAGCCCGACCCAGATGGAGCAGTACAAAGCCGCCTTGGAGGAGCTGAAGAAACTGGTTGCGCGTCTTGCTGACAGGGCCATGCTTCAGACTGCAACAAACCAGGTTTGTCAGTTTTTTCCTGGGGCTTCTTCCTCTTCCAATCTGCTGCATCATCCACACCCTCCTCAGGTGTTCCCCCAACCCCTGATTCAGCCACCCATGTTTCAGAACTTCATGTTCCCTGATGGGAACATCGTAAGCCACCATGGGTTTAATCAGATGGAAATGGGAGGATATGCACCTGGACCTGGACCTGCTGGTGTTTTCTTTTGA 744 0.5511 MSSESKKSRGRQKIEMKKMSKESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDSYLARAPSQDMGTMQFIEAHRLANVRDLNAQLTQINAQLEAGRQHGEELNRMKKDSQAQLWWAQPIEKMSPTQMEQYKAALEELKKLVARLADRAMLQTATNQVCQFFPGASSSSNLLHHPHPPQVFPQPLIQPPMFQNFMFPDGNIVSHHGFNQMEMGGYAPGPGPAGVFF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00732 247 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 Coils Coil 149 169 - -
Phac7g00732 247 MobiDBLite consensus disorder prediction 1 20 - -
Phac7g00732 247 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Phac7g00732 247 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 Gene3D - 89 183 - -
Phac7g00732 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Phac7g00732 247 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Phac7g00732 247 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Phac7g00732 247 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Phac7g00732 247 PANTHER MADS BOX PROTEIN 11 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00732 Phac-Chr7 4073031 4074174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00732 6 190 Type I MADS-box Gene Family AT5G60440 52.128 3.00e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac7g00732 SRF-TF 4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00732 - - gmx:100780445 321.627