Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00677 ATGGCATCTGCGGTTCCCGCCGCGGCGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATAACCAATCTCCGATTCTCAAATCACAGCGATAATCTCTTGGTCTCCTCATGGGACAAGAGTGTGCGCCTGTATGATGCCAGCGCCAATGTCTTGAGAGGAGAGTTCATGCACGCTGGTCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGTTTCAGTGCCGCCGCCGACAACACTGTTAGACGGCTTTTCTTCAGCTCCAATAAAGAGGATATTTTGGGGAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCGTATGCTGCAGGCCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGATCCTAGAGGCGCCAGTGGGCAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTGTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGAAACATGTCTCAACCTGAGCAAAAGAGAGAATCTTCATTAAAATATCAAACCAGATGTGTTCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAAGCTAGCCAAGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCGGAAGCTGGAAGGGACATAGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACATTTGCCACGGGTGGTTGTGATGGGTATGTTAACGTATGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCAACTAGCGTTGCCGCACTGTCGTTTAGCAGAGATGGACGCTTGTTGGCTGTTGCCTCAAGTTACACATTCGAAGAAGGACCTAAAAGCAACGAACCAGATGCTATTTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCAAAGCCCAAAGTCTATCCCAATCCTCCAGCGTGA 1026 0.4815 MASAVPAAAGRELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLFFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSNEPDAIFVRSVNEIEVKPKPKVYPNPPA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00677 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Phac7g00677 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Phac7g00677 341 PANTHER MRNA EXPORT FACTOR AND BUB3 11 327 - -
Phac7g00677 341 FunFam Mitotic checkpoint protein bub3, putative 6 334 - -
Phac7g00677 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Phac7g00677 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Phac7g00677 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Phac7g00677 341 SMART WD40_4 222 270 IPR001680 GO:0005515
Phac7g00677 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Phac7g00677 341 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Phac7g00677 341 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Phac7g00677 341 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Phac7g00677 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Phac7g00677 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Phac7g00677 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Phac7g00677 341 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Phac7g00677 341 Gene3D - 8 335 IPR015943 GO:0005515
Phac7g00677 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00677 Phac-Chr7 3741137 3744914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00677 75 303 U-box Gene Family AT2G33340 24.464 6.04e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00677 K02180 - gmx:100808389 652.129