Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00646 ATGATTTCCAATCGCTCAGGAATTCTTCCTCCTTCTGAGATTCGCTTCTTCAAGATTATAGTCCGTACTACTCTTCAAAAAGGAAAGCTTATGGTTCCAAAAGAGTTCACTAGGAAACATGGTGCTAGTTTGTCAAATCCAATGTTTCTCAAGCTTCCAGATGGCATTAAATGGGAATTTTGTTGGACTAAAGATGGTGCTGATAATGTTTGGTTGGAGAAGGGTTGGAAGGAATTTGCGACTTATTACTCCCTTGGTCACGGTCATTTGTTGGTATTCAAATACCAACAAACATGTAAATTATTGGAGGTAAACATATTCAAAGCAAGTGGCGTTGAAATAAATTATCCCTCCAACAGCACTCAAAATCATTCTGGTGAAGTTTTGTTTGAAGTAACTCCAACAATACCATCTTGTCCTGGAACTTCTAAAAAACAAAGGTCACGCAGTGGAGTTGTTGGAGAAAGCTCCAATTTACCTCAGCAAGTGTGTCAAGAGAATAGCAGTGGTGCCATCAGTTCTGAAACTCCCTCTTTTATGGTTGTCATGAAGGATTCATACGTGAACGGATATTTGCTGGTCATTCCATCCATATTTGCTAAAAAGTATTTGAAGAAAGAGGGGATACATGATGTCCTCCTTCGGGTCTTGGATGGGAGAACTTGGCACGTTGCATTAAAGGATGGCAAATTTAACAGAGGATGGAAGGATTTCGCATCCGATAATCGTTTGAAGGTTGGGGATATTTGTACTTTTGACCTAACAGAGAGCCAAGGTCTATGTTTTAAAGTATCAATAATTCCAATTTCACAAGATAAATGGTCGAGTTCACAAGGTCAAGAAGATGGTGACCTTATGAAAAATCGAGATTTAAAATGTATTAACACTATTTCCATCCAAGCTATGCAAGAAGCAAGAAATTTCACATCCGAAAATCCCTTTTTCATACTTAATATAAAGGAAAATCTTAGGGGAGATTGCAGACAGCGTGTACCAATTACGTTTCTGAGAAAGTACCTCCACAATAAGCAGGTTGTGATGTTACAATTTGGAAATAAATCATGGGAGGTAGGACTGATTGGTGCAATTCAAACGAAGATGTCTAATGGTTGGTCCCAATTTGCGAAGGAATGTAAGGTTCGGCACGGAGATGTTTGCGTCTTTGAGTTAATAAACATAAAAGATGCAGTGTTTGATGTTCACATTTTTAGGGGACGATCTTAG 1224 0.3856 MISNRSGILPPSEIRFFKIIVRTTLQKGKLMVPKEFTRKHGASLSNPMFLKLPDGIKWEFCWTKDGADNVWLEKGWKEFATYYSLGHGHLLVFKYQQTCKLLEVNIFKASGVEINYPSNSTQNHSGEVLFEVTPTIPSCPGTSKKQRSRSGVVGESSNLPQQVCQENSSGAISSETPSFMVVMKDSYVNGYLLVIPSIFAKKYLKKEGIHDVLLRVLDGRTWHVALKDGKFNRGWKDFASDNRLKVGDICTFDLTESQGLCFKVSIIPISQDKWSSSQGQEDGDLMKNRDLKCINTISIQAMQEARNFTSENPFFILNIKENLRGDCRQRVPITFLRKYLHNKQVVMLQFGNKSWEVGLIGAIQTKMSNGWSQFAKECKVRHGDVCVFELINIKDAVFDVHIFRGRS* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00646 407 PANTHER B3 DOMAIN-CONTAINING 172 400 - -
Phac7g00646 407 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Phac7g00646 407 CDD B3_DNA 177 268 IPR003340 GO:0003677
Phac7g00646 407 CDD B3_DNA 15 108 IPR003340 GO:0003677
Phac7g00646 407 ProSiteProfiles B3 DNA-binding domain profile. 178 270 IPR003340 GO:0003677
Phac7g00646 407 SMART B3_2 314 406 IPR003340 GO:0003677
Phac7g00646 407 SMART B3_2 179 270 IPR003340 GO:0003677
Phac7g00646 407 SMART B3_2 16 110 IPR003340 GO:0003677
Phac7g00646 407 SUPERFAMILY DNA-binding pseudobarrel domain 308 404 IPR015300 -
Phac7g00646 407 SUPERFAMILY DNA-binding pseudobarrel domain 172 268 IPR015300 -
Phac7g00646 407 ProSiteProfiles B3 DNA-binding domain profile. 314 406 IPR003340 GO:0003677
Phac7g00646 407 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
Phac7g00646 407 Gene3D - 161 270 IPR015300 -
Phac7g00646 407 Gene3D - 296 406 IPR015300 -
Phac7g00646 407 Gene3D - 10 111 IPR015300 -
Phac7g00646 407 CDD B3_DNA 313 404 IPR003340 GO:0003677
Phac7g00646 407 Pfam B3 DNA binding domain 179 263 IPR003340 GO:0003677
Phac7g00646 407 Pfam B3 DNA binding domain 314 405 IPR003340 GO:0003677
Phac7g00646 407 Pfam B3 DNA binding domain 16 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00646 Phac-Chr7 3585782 3588511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00646 300 404 B3 DNA Binding Superfamily AT3G18990 36.111 5.14e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac7g00646 B3 1.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00646 - - var:108325311 547.354