Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00550 ATGGGGGATCACTTTGAGTTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGGAATAAGTCTATGTTGGCTGCATCCTCAGCAGTGAATGACGCGAAAATTGATCTCAATTTGGTGAAGGTGGGTATGGATGATATAAAATTTCCGGGGAAGCTGGTAGAATGCAGGATATGTCATGATGACGATGAAGATACCAATATGGAGACACCCTGCTCCTGTTGTGGTAGTTTGAAGTTCGCTCACCGTAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACTACCTGTGAGATATGCCACCAGCAATTCAGGCCTGGTTATACTGCTCCTCCACCGCTATTTCAATTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCAACCGATCAAAACGTTACCACTTCTAACTATGATCAGTATTCAGCCTCTGCTACAGGAAGTTTGATTTGCTGTCGTTCAATTGCTGTCATTTTCATGGTTCTTCTGATTTTAAGACACACACTCCCCCTTGTAATCAGTGGAAATAAGGACTATTCTTTCCCACTCTTTTTGCTGTTGTTATTTCGGACTGTGGGAGTTGTTCTTCCCATATACTTCATGGTTAGAGCAGTGACATTAATCCAACGGCATCGGAGACAGCATCGAGTAAGTCTCTGCCATGGATCAATCACTATATCACATGAATCATCTATTTACATATATGAACTCTCTGATATTTTTTGTTGTTACTGTTAG 810 0.4173 MGDHFELLVDRLLTESTLEAALESRNKSMLAASSAVNDAKIDLNLVKVGMDDIKFPGKLVECRICHDDDEDTNMETPCSCCGSLKFAHRRCIQRWCNEKGDTTCEICHQQFRPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVTTSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVISGNKDYSFPLFLLLLFRTVGVVLPIYFMVRAVTLIQRHRRQHRVSLCHGSITISHESSIYIYELSDIFCCYC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00550 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Phac7g00550 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 116 IPR013083 -
Phac7g00550 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Phac7g00550 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Phac7g00550 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Phac7g00550 269 FunFam Zinc finger family protein 50 117 - -
Phac7g00550 269 SUPERFAMILY RING/U-box 61 112 - -
Phac7g00550 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Phac7g00550 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00550 Phac-Chr7 3096702 3100547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00550 51 112 C3H Transcription Factor Family AT2G37950 43.077 1.75e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00550 - - vun:114190540 483.796