Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00499 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCCCCGCTGCTGCCTCTGGTCAAATGCCGTCAAACGGAGGCTACAGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAATTGTAGCAATGGCGGCGGCGTTTCGCTGTATCCTTACTCCGAGTCAACACCTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGCCAGCTCCGCGCCGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATTCAGGCTTCGCTGGAGAGTCAGTTCGCCGCCGCCGGCAGTGGCTCCTCCGGCCAGACTCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGGAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTATGAATAATAATAATAATAACAAGGACCTGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATGGAAAATAACGTGGTGGAAGTTGAGAGGTTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGCAACTCGCAATAAAGGCGCAACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTATGTAACAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTATGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1098 0.5209 MLNKDACSPSSNGGFGPAAASGQMPSNGGYSSLYSALSNDNLPSLSANCSNGGGVSLYPYSESTPQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQFAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNIMNNNNNNKDLQEVSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNATRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00499 365 FunFam Zinc finger protein 36, C3H1 type-like 1 314 350 - -
Phac7g00499 365 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Phac7g00499 365 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Phac7g00499 365 MobiDBLite consensus disorder prediction 1 17 - -
Phac7g00499 365 MobiDBLite consensus disorder prediction 1 22 - -
Phac7g00499 365 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Phac7g00499 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 306 IPR000571 GO:0046872
Phac7g00499 365 Gene3D - 314 350 - -
Phac7g00499 365 Gene3D - 275 313 - -
Phac7g00499 365 SUPERFAMILY CCCH zinc finger 277 312 IPR036855 GO:0046872
Phac7g00499 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 352 IPR045877 GO:0003729
Phac7g00499 365 Coils Coil 89 116 - -
Phac7g00499 365 SUPERFAMILY CCCH zinc finger 314 348 IPR036855 GO:0046872
Phac7g00499 365 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Phac7g00499 365 FunFam zinc finger CCCH domain-containing protein 15-like 274 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00499 Phac-Chr7 2822461 2826017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00499 60 360 C3H Transcription Factor Family AT1G68200 49.515 1.85e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac7g00499 zf-CCCH 3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00499 K18753 - gmx:100819250 599.356