LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac7g00404	ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAGTATTGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATCATGCTATCCAAGAGTAAGAGCACATCTGGTGACGGATCTACTACTTCAACTGCACCATCGACCAAGACACCACAGACTAGTGCGCCTCCTACTTCAACAACGTCAGTGTCAACTGAACCACAAGCTCCTGCTGCAACTGAGGCACCGCCAGCAGCTGTTACTGCAGCTGTATCTTCTTCACCTTCTCCAACTCTAGCTCCTGCTTCTATTTCTTCAGGAACTCCTGTGGAGGGGTCTGATGTCTATGGGCTAGCGGCATCCAATCTCGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAGATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCTGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCAGAGCACCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCGGCTCCACAGACAGCACAACCTGCTCCGGTTACCTCAACTGGACCTAATGCTAATCCTTTAGACCTTTTCCCGCAGGGCCTTCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGCCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAAGGGAACATATTGGGGCAGCTGGCTGGTGGCATGCCACAAGCAGTGTCTGTCACTGCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGTGCAATCGTATTGGAGGTCTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCGAACTACCTTCTAGATCACATTCACGAGTTTGATGAACAATAG	1203	0.4838	MKVFVKTLKGTHFEIEVQPQDTVSEVKKSIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGDGSTTSTAPSTKTPQTSAPPTSTTSVSTEPQAPAATEAPPAAVTAAVSSSPSPTLAPASISSGTPVEGSDVYGLAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVSVTAEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHIHEFDEQ*	401

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac7g00404	400	FunFam	UV excision repair protein RAD23 homolog	346	394	-	-
	Phac7g00404	400	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	388	-	-
	Phac7g00404	400	Gene3D	-	265	330	IPR036353	GO:0003684\|GO:0006289\|GO:0043161
	Phac7g00404	400	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	352	393	IPR015940	-
	Phac7g00404	400	SUPERFAMILY	UBA-like	164	216	IPR009060	GO:0005515
	Phac7g00404	400	PRINTS	DNA repair protein Rad23 signature	300	322	IPR004806	GO:0006289
	Phac7g00404	400	PRINTS	DNA repair protein Rad23 signature	349	365	IPR004806	GO:0006289
	Phac7g00404	400	PRINTS	DNA repair protein Rad23 signature	366	380	IPR004806	GO:0006289
	Phac7g00404	400	PRINTS	DNA repair protein Rad23 signature	381	396	IPR004806	GO:0006289
	Phac7g00404	400	Gene3D	-	160	210	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac7g00404	Phac-Chr7	2072131	2076329	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac7g00404	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	37.838	9.58e-09	51.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac7g00404	K10839		-	gmx:100814162	582.022

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