Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00382 ATGACCATTAACCTCAAACACGAGCTCATCTTCAACAGCTACAAAACCGTCGACGGCCGCGGCGCCAACGTCCACGTGACGGGCCACGGCTGCATCACGCTCCAGTACGTCTCCGACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCAGGGAACACCAACATACGGGCCAGTCCAACGCACGTTGGGTGGAGGGGGAGATCGGACGGCGACGGCATCTCCATCTTCAGCTCCCGGAAGATCTGGATCGACCACTGCTCCCTCTCTTACTGCACGGACGGCCTGATCGACGCCATAATGGGCTCCACCGCGATTACCATTTCCAACAACCACTTCGCCCACCACGACGAGGTCATGCTCTTGGGACACAACGATAAGTACTCCCCCGACAGAGGCATGCAGGTCACCATTGCGTTCAACCACTTCGGCGAGGGTTTGGTTCAGCGCATGCCACGTTGCAGACTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGGAGATGTACGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCAACCCTGATGCCAAAGAGGTGACGAAGCGCGTGGATACAGACGACAGGGAGTGGAGTGGTTGGAATTGGAGAACGGAAGGGGACGTAATGGTAAATGGAGCATTCTTTGTACCGTCGGGTGCAGGGATGAGTGCACAGTACGCAGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCAACCAGCAAGGGCAACAGTGCGGGGTCCAGCAGTGACGATGGAGACTTCTTCGGAATGATATTCAGAGGAAGCAGCAGCCATGCAGCGCCACCGTCATCACCCTCTTCCTCCACTGTGTTTGTCACAACCTTTTTGTCTCTTCTAATTATTCTCATTTTGGACACTTCCACCACCAACCATCCCATTCTATGA 1056 0.5634 MTINLKHELIFNSYKTVDGRGANVHVTGHGCITLQYVSDVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSNPDAKEVTKRVDTDDREWSGWNWRTEGDVMVNGAFFVPSGAGMSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSAGSSSDDGDFFGMIFRGSSSHAAPPSSPSSSTVFVTTFLSLLIILILDTSTTNHPIL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00382 351 PANTHER PECTATE LYASE 18-RELATED 1 266 IPR045032 GO:0030570
Phac7g00382 351 SMART amb_all 1 197 IPR002022 -
Phac7g00382 351 Gene3D - 1 267 IPR012334 -
Phac7g00382 351 Pfam Pectate lyase 8 189 IPR002022 -
Phac7g00382 351 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 174 193 IPR018082 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 216 240 IPR018082 -
Phac7g00382 351 PRINTS Pollen allergen Amb family signature 245 268 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00382 Phac-Chr7 1917380 1922301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00382 1 272 Polysaccharide Lyase AT3G54920 72.527 4.36e-147 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00382 K01728 - gmx:100808438 630.172