Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00380 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCCCCCCCAATTGAAGCTCTCCTCAACCTCACCGTACTACCCCACCAACACCCTCACCCCGAATCCATAGTCCACGAACTTCAACGGAAGGTAAATGTCTCGTTATGGAGAAGGCAAACACTGTCCAAGGACCAACAAGCCACGTGTCTCACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGGGGCAAACCGGCAGAAGCTGGCGGAGTGCGGCATCGGGTTCGGCAAAGACACCGTGGGCGGGAAGGGCGGGCAGATCTACGTGGTGACGGACTCGTCGGACCGCGACCCAGCCAACCCCGTTCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAGCCTCTCTGGATCGTGTTCGCCGCGGACATGACCATTAACCTCAAACACGAGCTCATCTTCAACAGCTACAAAACCGTCGACGGCCGCGGCGCCAACGTCCACGTGACGGGCCACGGCTGCATCACGCTCCAGTACGTCTCCGACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCAGGGAACACCAACATACGGGCCAGTCCAACGCACGTTGGGTGGAGGGGGAGATCGGACGGCGACGGCATCTCCATCTTCAGCTCCCGGAAGATCTGGATCGACCACTGCTCCCTCTCTTACTGCACGGACGGCCTGATCGACGCCATAATGGGCTCCACCGCGATTACCATTTCCAACAACCACTTCGCCCACCACGACGAGGTCATGCTCTTGGGACACAACGATAAGTACTCCCCCGACAGAGGCATGCAGGTCACCATTGCGTTCAACCACTTCGGCGAGGGTTTGGTTCAGCGCATGCCACGTTGCAGACTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGGAGATGTACGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCAACCCTGATGCCAAAGAGGTACACTGA 1041 0.5908 MLPITCILLMCLLSSFSPPIEALLNLTVLPHQHPHPESIVHELQRKVNVSLWRRQTLSKDQQATCLTGNPIDDCWRCDPNWGANRQKLAECGIGFGKDTVGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSYKTVDGRGANVHVTGHGCITLQYVSDVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSNPDAKEVH* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00380 346 Gene3D - 68 346 IPR012334 -
Phac7g00380 346 Pfam Pectate lyase 150 332 IPR002022 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Phac7g00380 346 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Phac7g00380 346 SMART amb_all 143 340 IPR002022 -
Phac7g00380 346 PANTHER PECTATE LYASE 18-RELATED 32 345 IPR045032 GO:0030570
Phac7g00380 346 SUPERFAMILY Pectin lyase-like 47 344 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00380 Phac-Chr7 1917380 1922301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00380 1 345 Polysaccharide Lyase AT3G53190 70.774 4.03e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00380 K01728 - gmx:100808438 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g00380 7 1917380 1922301 Phac7g00380 7 1917380 1922301 ECH