Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00333 ATGGCCACATCATCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGACGATCAGAACCAGATGAAGCAGCAGCATTCCTTGACACCATCTTCGTCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAGCCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACATAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACCGATGTGACTGTGGTACACTCTTCTCCAGGAGAGACAGCTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCGCCAAACCTTGGCGCCGCCATTGGCACCCACCTCTTCGGAACCGCCGCCAACACCATCCCTCTTAACCTTTCTCAGGTCGCTTCTCACATCTCCAACATCCAAGACCCCACCACCCAACCAACAGAACTCCTCCGCCTAGGCGGCGCCGCCGCCGCCAGAACCGGCCAATTCGACCACCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACAACCCTTCTTCATCGAACCTAACCAAAACTACCACCCCGACCAACAACAACAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTAATGCAACTCTCTGATCACCTCACCAACAACACCAACTCACCCTTCAACCTTCCCTTCCTTTCAAACACCAATGCTTCATTCTCAGAAAACTTCAACAACAGCAGCAGCAACAACAACAACGAGGGCACTAACTTCTTCACAACTTCAAGCGCTCCTTCTCTCTTCAGCAACAACGCTGTGAGCGCAAACGCCAATGCCAACGCGCTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCCGCACAAATGGGTGCCTCTTCGAGCAACAGCACCGCTTCGCTGCTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGGTGAATGCTGCGAACTACGGCGGCGGGATCTTCGGAGGGAACGTGAACGAACAGAGTAACAGCAACCTGCAAGACTTGATGAACTCGTTCGCTGTCAGTGGAAACTCTTCCATTTTCGAAGGTGGGTTTGAAGCATATGATCATAACAACAGGGAGGGAAAAGTGCATGCAATGAGCGGAAGCAGCAGCATTGGAGGGTCTGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATAGTTAGAGGCATGAGTGGGAGTGGAGGGGTTGCACACAGAGAACACCATGGCTTCAACTTGAGTTCTTTGGAAGCAGCAGATCAAAGAAATAACAGTAACAGCAATAACAATAATAATAATGCTGCTGCGCCGTCAGGTCAAGCTTTTGGAGGCGGTGGAGGGAATTTTCAGTGA 1683 0.5033 MATSSSSASLFGFREDDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGAAIGTHLFGTAANTIPLNLSQVASHISNIQDPTTQPTELLRLGGAAAARTGQFDHLLGSPFRPSQQQQPFFIEPNQNYHPDQQQQQQGLLQNKPFQQGLMQLSDHLTNNTNSPFNLPFLSNTNASFSENFNNSSSNNNNEGTNFFTTSSAPSLFSNNAVSANANANALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRVNAANYGGGIFGGNVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAHREHHGFNLSSLEAADQRNNSNSNNNNNNAAAPSGQAFGGGGGNFQ* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00333 560 SMART c2h2final6 112 142 IPR013087 -
Phac7g00333 560 SMART c2h2final6 71 93 IPR013087 -
Phac7g00333 560 SMART c2h2final6 147 167 IPR013087 -
Phac7g00333 560 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Phac7g00333 560 MobiDBLite consensus disorder prediction 1 32 - -
Phac7g00333 560 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 527 IPR031140 -
Phac7g00333 560 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Phac7g00333 560 MobiDBLite consensus disorder prediction 531 548 - -
Phac7g00333 560 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Phac7g00333 560 MobiDBLite consensus disorder prediction 531 560 - -
Phac7g00333 560 Gene3D Classic Zinc Finger 54 119 - -
Phac7g00333 560 FunFam protein indeterminate-domain 12-like 50 118 - -
Phac7g00333 560 MobiDBLite consensus disorder prediction 1 55 - -
Phac7g00333 560 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Phac7g00333 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Phac7g00333 560 Gene3D Classic Zinc Finger 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00333 Phac-Chr7 1606861 1615856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00333 10 512 IDZ Gene Family AT2G02070 47.945 5.61e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac7g00333 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00333 K25870 - gmx:100799389 756.518